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...taaaataataatattatagcaagcagcaatcaaattatgtgatcaatgattgtgctgagtaaactaacattctgaatttctggttgtgaattttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACAGATTACAGAACATATGGACTTGTGGCTATCTGAGTGCCAAGAAGGCAG
species | Glycine max |
transcript | GLYMA16G24270.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCAEST: gi|192307850|gb|FG999329.1|FG999329
genomic: CCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCA
EST: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACEST: gi|6227846|gb|AW156445.1|AW156445
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACANAGTAAGGCAACEST: gi|6718797|gb|AW306444.1|AW306444
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACEST: gi|208319638|gb|GE110775.1|GE110775
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACEST: gi|9984582|gb|BE658690.1|BE658690
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACEST: gi|193700940|gb|FK639951.1|FK639951
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACEST: gi|208067229|gb|GD862671.1|GD862671
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACEST: gi|192303245|gb|FG995581.1|FG995581
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACEST: gi|207786016|gb|GD758269.1|GD758269
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: CATTGTACTGATTTTCGTAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
genomic: CATTGTACTGATTTTCG-AGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
atgattgtgctgagtaaactaacattctgaatttctggttgtgaattttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACAGATTACAGAACATATGGACTTGTGGCTATCTGAGTGCCAAGAAGGCAG
aactaac putative branch site (score: 1)
ttttgttc putative PPT
aattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaataataatattatagcaagcagcaatcaaattatgtgatcaatgattgtgctgagtaaactaacattctgaatttctggttgtgaattttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAACAGATTACAGAACATATGGACTTGTGGCTATCTGAGTGCCAAGAAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-aaaataa
- - - - - - - - - gcaagca
- - - - - - - - - - - - -gcaatca
- - - - - - - - - - - - - - - - - - - - - - - - - tgtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtg