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...tacgacaatttatgtggcctcccaaaatcactcttttccactaatgttgctttgttctactatttggcttgcaaaaataatcttgagtatttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTACATTACACGTGCATCAATTGGAGGAAGACTCTGACAAGTGGCAGCAAC
species | Glycine max |
transcript | GLYMA16G23870.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATCACGTGTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCEST: gi|208252551|gb|GE046129.1|GE046129
genomic: AATCACGTGTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGAT-GGTCTAGTGGATTTCCGGGAGTTTGTAGCGGC
EST: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGTCCAGTGGATTTCCGEST: gi|193718866|gb|FK655244.1|FK655244
genomic: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCG
EST: CACGTGTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTEST: gi|208260162|gb|GE059002.1|GE059002
genomic: CACGTGTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCT
EST: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTEST: gi|22931966|gb|BU549105.1|BU549105
genomic: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCT
EST: ACTAGAGATATTGCAAGCG ATAGACAACAACACTGATNNTNNAGTGGATTTCCGGGAGTTTGTAGCGGCTEST: gi|16348882|gb|BI974477.1|BI974477
genomic: ACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCT
EST: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTEST: gi|193527749|gb|FK485939.1|FK485939
genomic: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCT
EST: CACGTGTACTAGAGATTATTTGTCAAGCG ATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCEST: gi|9204567|gb|BE330791.1|BE330791
genomic: CACGTGTACTAGAGA-TA-TTG-CAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGC
EST: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTEST: gi|193432383|gb|FK394769.1|FK394769
genomic: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCT
EST: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGTCTAGTGEST: gi|11274128|gb|BF324496.1|BF324496
genomic: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTG
EST: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTEST: gi|193630006|gb|FK573298.1|FK573298
genomic: ATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCT
EST: GTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTEST: gi|193490437|gb|FK453364.1|FK453364
genomic: GTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCT
EST: GTACTAGAGATATTGCAAGCG ATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCT
genomic: GTACTAGAGATATTGCAAGCGgttagtatgt ... ttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCT
gttgctttgttctactatttggcttgcaaaaataatcttgagtatttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTACATTACACGTGCATCAATTGGAGGAAGACTCTGACAAGTGGCAGCAAC
tttattt CT-rich tract
aaaaataatcttgagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgacaatttatgtggcctcccaaaatcactcttttccactaatgttgctttgttctactatttggcttgcaaaaataatcttgagtatttatttgcagATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTACATTACACGTGCATCAATTGGAGGAAGACTCTGACAAGTGGCAGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - -cctccca
- - - - - - - - - - - - - - - - - - -ccactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa