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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcctattttttgaccagcattaagactcggaatatacttgtcaaaagttgtattatatttattgttttattttggttttttacactcttgttatatgtagGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCATCTAA

Basic information

species Glycine max
transcript GLYMA16G18030.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os02g07070.1 (Oryza sativa), 3'ss of exon 14
--------------------------------------------------------gcctattttttgaccagcattaagactcggaatatacttgtcaaaagttgtat----tatatttattgttt---tattttggttttttacactcttgttatatgtagGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCATCTAA
                                                        | ||  |||||||   |  ||   | |     | |  ||   ||||  ||| |     || |  ||||||    ||||   |||| | ||  | |  || | |  ||| ||||||||||||||||||  |||  | |||||||||||||| || |||||||| |||||  | ||||| | ||| || ||    | ||||||| ||  
gtatgtatattgccacaattttcttactatgatcaattcagaaatactttccatgtgacttgtttttgaaatgttttccaattttccttttttttaaaaaaaaatgtttgctccatgtcaattgttaaagtattacagtttataaccttgtatttgttttcagGACTTTACTATGATGGTAATGCTGGAGTGTGGTATTCATATGATCAACAAACTCAACAGTATGTCCCTTGTAGTGAACAGAACAGCAGTAAAGCAGCTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgtattatatttattgttttattttggttttttacactcttgttatatgtagGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCATCTAA
                                       ctcttgtt  CT-rich tract
     tattatatttattgtt  TA-rich tract