1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaaggcctaaatggactaatatgaccattctagttttcaaattccgctcctactaccataaaaggttcattcaaagactgagccagctatctgattacagGATAGACTTGGGGAGATACCTGGTGTCACGACACCTGGGAAGGAGGATCTTAGGTCTGGCCAGAATGATCAGCATGTGAGTAATGACACTCAACAAAGTG
species | Glycine max |
transcript | GLYMA16G15810.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAG GATAGACTTGGGGAGATACCTGGTGTCACGACACCTGGGAAGGAGGATCTTEST: gi|192312737|gb|FK005391.1|FK005391
genomic: GGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgattttga ... ctgattacagGATAGACTTGGGGAGATACCTGGTGTCACGACACCTGGGAAGGAGGATCTT
EST: GGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAG GATAGACTTGGGGAGATACCTGGTGTCACGACACCTGGGAAGGAGGATCTTEST: gi|192312736|gb|FK005390.1|FK005390
genomic: GGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgattttga ... ctgattacagGATAGACTTGGGGAGATACCTGGTGTCACGACACCTGGGAAGGAGGATCTT
EST: GGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAG GATAGACTTGGGGAGATACCTGGTGTCACGACACCTGGGAAGGAGGATCTT
genomic: GGATCAGGAGTGAGTATGAGCAGCTACGTTCTGAGAATGCTGCCCTCAAGgtgattttga ... ctgattacagGATAGACTTGGGGAGATACCTGGTGTCACGACACCTGGGAAGGAGGATCTT
gctcctactaccataaaaggttcattcaaagactgagccagctatctgattacagGATAGACTTGGGGAGATACCTGGTGTCACGACACCTGGGAAGGAGGATCTTAGGTCTGGCCAGAATGATCAGCATGTGAGTAATGACACTCAACAAAGTG
atctgat putative branch site (score: 4)
ataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaggcctaaatggactaatatgaccattctagttttcaaattccgctcctactaccataaaaggttcattcaaagactgagccagctatctgattacagGATAGACTTGGGGAGATACCTGGTGTCACGACACCTGGGAAGGAGGATCTTAGGTCTGGCCAGAATGATCAGCATGTGAGTAATGACACTCAACAAAGTG
- - gcctaaa
- - - - - - - - - - - - ccattct
- - - - - - - - - - - - - - - - - - - - - - - - - -actacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcaa