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gtgaataagttatttattgtttatactttatatagtggtcatgttgatttcctgagttagtttttaaattgaaattgctaattttcttatatttatttctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG
species | Glycine max |
transcript | GLYMA16G08460.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAEST: gi|19453158|gb|BM954568.1|BM954568
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
EST: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAEST: gi|15203110|gb|BI425878.1|BI425878
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
EST: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAEST: gi|14990386|gb|BI316059.1|BI316059
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
EST: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAEST: gi|19053118|gb|BM731785.1|BM731785
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
EST: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAEST: gi|6566798|gb|AW234430.1|AW234430
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
EST: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAEST: gi|6341574|gb|AW164398.1|AW164398
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
EST: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCGAAGCAG ACGAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAEST: gi|298199413|gb|HO042776.1|HO042776
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
EST: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGAAAGAAGATATGGCTTGTAGACTCAEST: gi|208341298|gb|GE138994.1|GE138994
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
EST: GCTGGAACTGGAATAGCNGAACTA-TAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTACEST: gi|19453207|gb|BM954617.1|BM954617
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACT-C
EST: GGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAEST: gi|7326720|gb|AW620518.1|AW620518
genomic: GGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
EST: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
genomic: GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGgtgaataagt ... tctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCA
tgagttagtttttaaattgaaattgctaattttcttatatttatttctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG
tgctaat putative branch site (score: 2)
tttatttctc putative PPT
tttttaaattgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaataagttatttattgtttatactttatatagtggtcatgttgatttcctgagttagtttttaaattgaaattgctaattttcttatatttatttctcgtgcagACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG