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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaacttaatttatttatattgttttttttataagaaatgacctacggttcaattggaggtgatcctaaactagttgtctttctggttgcagCTGGGACCAGGGGATCACTGGATCGGCTGGGCCTCAAGAGATACTCTGGTGCTTTGCCTAATACAAAAATCACCAACAATTTTACTTCCCCAAAAGTACA

Basic information

species Glycine max
transcript GLYMA16G08080.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193487476|gb|FK451323.1|FK451323
EST:     CATCCCACCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCTGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... ctggttgcagCTGGGACCAGGGGATCACTGGATCGGCTGGGCCTCAAGAGATACTCTGGTG
EST: gi|208047321|gb|GD844418.1|GD844418
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCTGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... ctggttgcagCTGGGACCAGGGGATCACTGGATCGGCTGGGCCTCAAGAGATACTCTGGTG
EST: gi|26056243|gb|CA799157.1|CA799157
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCTGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... ctggttgcagCTGGGACCAGGGGATCACTGGATCGGCTGGGCCTCAAGAGATACTCTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgacctacggttcaattggaggtgatcctaaactagttgtctttctggttgcagCTGGGACCAGGGGATCACTGGATCGGCTGGGCCTCAAGAGATACTCTGGTGCTTTGCCTAATACAAAAATCACCAACAATTTTACTTCCCCAAAAGTACA
                          tcctaaa  putative branch site (score: 2)
                                     ttgtctttct  putative PPT
           ttcaatt  TA-rich tract