1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctactaccagttttggctcacatttcatttttaagtatgtaactattcaccagccgaacattttctaatggctaccaatctttaactctttaatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTACAAGACAG
species | Glycine max |
transcript | GLYMA16G05180.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAA GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTEST: gi|7691356|gb|AW759414.1|AW759414
genomic: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
EST: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAA GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTEST: gi|10237257|gb|BE806145.1|BE806145
genomic: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
EST: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAA GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTEST: gi|22522206|gb|BU081017.1|BU081017
genomic: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
EST: ATTCAACAGGAA GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTEST: gi|27426582|gb|CA938102.1|CA938102
genomic: ATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
EST: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAA GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
genomic: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
ttcaccagccgaacattttctaatggctaccaatctttaactctttaatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTACAAGACAG
ctcttt CT-rich tract
tttaactctttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctactaccagttttggctcacatttcatttttaagtatgtaactattcaccagccgaacattttctaatggctaccaatctttaactctttaatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTACAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- actacca
- - - - - - - - ctcacat
- - - - - - - - - - - - - - - - - - - - - - -ttcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaccaa