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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctcagtaatctgtttttgtgatctgagtcacttgattaaatacttttttttatgtgctgttctagctcttattttgaatcaatgtgttctagGTTGGTGATTGCTTGGGAACTTTGATAAAGACATTCAGGGCATCTTTCTTGCCTTTCTTTGATGATCTGTCCTCATACCTAACTCCTATGTTT

Basic information

species Glycine max
transcript GLYMA16G04400.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04400.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 3'ss of exon 12
-----------------gtatgctcagtaatctgtttttgtgatctgagtcact-tgattaaatactttt---tttta--tgtgctg-ttctagctcttattttgaatcaatgtgttctagGTTGGTGATTGCTTGGGAACTTTGATAAAGACATTCAGGGCATCTTTCTTGCCTTTCTTTGATGATCTGTCCTCATACCTAACTCCTATGTTT
                  | |     | ||  ||  ||||| |  |||     | || |    | |||||   || ||  |||| || |||| | |    || ||   |  | |  |  || | |||||||||||||| |||||||| || || |||| | | ||||||||||||||||||||||| || || || ||||| |  |||||||  
gtatgctcttcagacatatttatgttgaaaattgggtttgttagttgatcggttgtgttctcctgcttttagattgtaaatgtgttgattcttgttgcctttatgt-cctttttaatacagATCGGTGATTGCTTGGGCACTTTGATCAAAACCTTCAAGTCTTCTTTCTTGCCTTTCTTTGATGAGCTTTCATCTTACCTGATGCCTATGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690810|gb|BG157146.1|BG157146
EST:     GAGAACTACTCAAAGAAGAAAATGAGCAAGAAGAGGAACTTTTTGATCAA                         GTTGGTGATTGCTTGGGAACTTTGATAAAGACATTCAGGGCATCTTTCTTG
genomic: GAGAACTACTCAAAGAAGAAAATGAGCAAGAAGAGGAACTTTTTGATCAAgtatgctcag ... tgtgttctagGTTGGTGATTGCTTGGGAACTTTGATAAAGACATTCAGGGCATCTTTCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatacttttttttatgtgctgttctagctcttattttgaatcaatgtgttctagGTTGGTGATTGCTTGGGAACTTTGATAAAGACATTCAGGGCATCTTTCTTGCCTTTCTTTGATGATCTGTCCTCATACCTAACTCCTATGTTT
                               ttattttgaatcaat  TA-rich tract