Sequence
atgc intronic sequence ATGC exonic sequencegtaaacttagttcattttgtaaaataagaaaattgctctcttgtaacttgtttgagagttaagtaactgatgtaaactaccatttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAACAGGACGCTGTTCTTTGAGTTTGTCAAAA
Basic information
species | Glycine max |
transcript | GLYMA16G03340.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G03340.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G053047_T02 (Zea mays), 3'ss of exon 13
------gtaaacttagttcattttgtaaaataagaaaattgctctcttgtaacttgtttgagagttaagtaactgatgtaaac----taccatt--tgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAACAGGACGCTGTTCTTTGAGTTTGTCAAAA
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aggaaaataaactaatttcccttggaaaaatgaaaa---ccccttagaaaaatgaggttcccagattagcccttagtgtttacattatgctgttgattttcagAATGTTTGTTGATGCACTGGATGCACAAATGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAG
upper sequence: GLYMA16G03340.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G159053_T01 (Zea mays), 3'ss of exon 2
gtaaacttagttcattttgtaa-aataagaaaattgctctcttgtaacttg---tttgagagttaagtaactgatgtaaac----taccatt--tgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAACAGGACGCTGTTCTTTGAGTTTGTCAAAA-
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-ctgtgttcattcattttaccctgataggactatcataccatagaaatttaggcttttatatatacttcattagtgtttacagtatgttgttgcttttcagAATGTTTGTTGATGCACTGGATGCACAAATGTACGACAAACACCATCAAACTGGGCATTGCATCTTGAGTCT-TCACAAG
upper sequence: GLYMA16G03340.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv15s0046g01620.t01 (Vitis vinifera), 3'ss of exon 12
-------gtaaacttagttcattttgtaaaataagaaaattgctctcttgtaacttgtttgagagttaagtaactgatgtaaactaccatttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAACAGGACGCTGTTCTTTGAGTTTGTCAAAA
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gtactggatatagcaattgaggggtgtata-caggcaagtttagcccatttttcatctttcaaatct---taatttgaatattgtaccatct--gcagGATGTTTGTGGATGCATTGGATGCACAGATATACAATGACCACCATCAAAGAGGGCACTGCTATCTGAGTTTGTCCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19271189|gb|BM887445.1|BM887445EST: TCGTTTATGGAGTTTGTAATGTTCTCTAG AATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAAC
genomic: TCGTTTATGGAGTTTGTAATGTTCTCTAGgtaaacttag ... atttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctcttgtaacttgtttgagagttaagtaactgatgtaaactaccatttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAACAGGACGCTGTTCTTTGAGTTTGTCAAAA
ttaagtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaacttagttcattttgtaaaataagaaaattgctctcttgtaacttgtttgagagttaagtaactgatgtaaactaccatttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAACAGGACGCTGTTCTTTGAGTTTGTCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT