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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttatgtactaattatgacaaatttatttactgatattgagcaacaaaattgatgattgcattttccatccttttggtaattataaactgattgtttgtgtcttgcaagGTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAGATTCCGGCCATTGTCACCCGCTTGACAGAGTTCCATGAAAAATTCATGG

Basic information

species Glycine max
transcript GLYMA16G01630.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01630.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv09s0002g00340.t01 (Vitis vinifera), 3'ss of exon 14
gttagtttatgtactaattatgacaaatttatttactgatattgagcaacaaaattgatga----ttgcattttccatccttttggtaattataaactgat-tgt-ttgtgtct---tgcaagGTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAGATTCCGGCCATTGTCACCCGCTTGACAGAGTTCCATGAAAAATTCATGG
                       | |||    | | ||||||  || | ||  ||  ||||    |||   || ||| |   || |  | | |  | |||| ||| |||||  |   ||  |||||||||| ||||||||||| |||||||| ||| |||||| |||||| |||||||||||  ||||| ||||| ||||||| |||||  ||  ||||||||
-----------------------ctaatgggctgagtgatatgaagtatcacgatatatgaatagttgttgttgccaccagctttgcgagttttgattgatctgtattgtgattctgtgacagGTTCCTGGGACATGGCATTTCAGGTGCACAATACTGCCTCAAGAAGATAAGATTCCGGCTGTTGTCTCCCGCCTGACAGAATTCCACAAAGGATTCATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602082|gb|BQ612413.1|BQ612413
EST:     TGCTTAACGCGACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAG                         GTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAG
genomic: TGCTTAACGCGACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAGgttagtttat ... gtcttgcaagGTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAG
EST: gi|208134136|gb|GD927001.1|GD927001
EST:     TGCTTAACGCGACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAG                         GTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAG
genomic: TGCTTAACGCGACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAGgttagtttat ... gtcttgcaagGTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAG
EST: gi|16347418|gb|BI973013.1|BI973013
EST:     TGCTTAACGCGACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAG                         GTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAG
genomic: TGCTTAACGCGACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAGgttagtttat ... gtcttgcaagGTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAG
EST: gi|10234277|gb|BE803165.1|BE803165
EST:     TGCTTAACGCGACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAG                         GTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAG
genomic: TGCTTAACGCGACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAGgttagtttat ... gtcttgcaagGTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgcattttccatccttttggtaattataaactgattgtttgtgtcttgcaagGTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAGATTCCGGCCATTGTCACCCGCTTGACAGAGTTCCATGAAAAATTCATGG
                               aactgat  putative branch site (score: 3)
                 ttttggtaattataaa  TA-rich tract