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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgacacgtactatgatcatgatgagttgtatatttctctttcaattaccagcaaccccagtttctaatgtttttttttttggttaaattttctttgcagTGATCACGAAGGTGGCAATGTTAGTTCACACACAGCCCACCTA

Basic information

species Glycine max
transcript GLYMA15G42300.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408594|gb|EV278402.1|EV278402
EST:     GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAG                         TGATCACGAAG-TGGCAATGTTAGTTCACACACAGCCCACCTA
genomic: GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAGgttagcattc ... ttctttgcagTGATCACGAAGGTGGCAATGTTAGTTCACACACAGCCCACCTA
EST: gi|10847452|gb|BF070139.1|BF070139
EST:     GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAG                         TGATCACGAAGGTGGCAATGTTAGTTCACACACAGCCCACCTA
genomic: GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAGgttagcattc ... ttctttgcagTGATCACGAAGGTGGCAATGTTAGTTCACACACAGCCCACCTA
EST: gi|8825797|gb|BE209527.1|BE209527
EST:     GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAG                         TGATCACGAAGGTGGCAATGTTAGTTCACACACAGCCCACCTA
genomic: GATGATCCGGAAATGCTGGAGTTTATGAGGCTGTATATTTCCATCCACAGgttagcattc ... ttctttgcagTGATCACGAAGGTGGCAATGTTAGTTCACACACAGCCCACCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaccagcaaccccagtttctaatgtttttttttttggttaaattttctttgcagTGATCACGAAGGTGGCAATGTTAGTTCACACACAGCCCACCTA
                 ttctaat  putative branch site (score: 2)
                                           ttttctttgc  putative PPT
                tttctaatgttttttt  TA-rich tract