1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gaacattgatttgttttttttaccaaatttttgtgttagcttttttttttatttgttttagaacattgaatgtcttctcgactcaactactcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAATGTCAGATTGTGTGGTTGTCGAGATAAAGGAACCTGAGCCTGTACCTG
species | Glycine max |
transcript | GLYMA15G40110.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|7234102|gb|AW569442.1|AW569442
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|208088619|gb|GD887337.1|GD887337
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|8402447|gb|BE058081.1|BE058081
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACANAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|208148111|gb|GD949727.1|GD949727
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCEST: gi|208199713|gb|GD999954.1|GD999954
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGC
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|7234622|gb|AW569958.1|AW569958
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|298170123|gb|HO018747.1|HO018747
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|31309826|gb|CD395029.1|CD395029
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|6951494|gb|AW423562.1|AW423562
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
genomic: CCGGAAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTA
tttttatttgttttagaacattgaatgtcttctcgactcaactactcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAATGTCAGATTGTGTGGTTGTCGAGATAAAGGAACCTGAGCCTGTACCTG
ctactctttt CT-rich tract
atttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacattgatttgttttttttaccaaatttttgtgttagcttttttttttatttgttttagaacattgaatgtcttctcgactcaactactcttttacagGTGGTCAGATGTTGCCTGGAACATGCAGCCTCTGTAGCCAAAACCTTCTTAATGTCAGATTGTGTGGTTGTCGAGATAAAGGAACCTGAGCCTGTACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - tgatttg
- - - - - - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactac