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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC

Basic information

species Glycine max
transcript GLYMA15G19670.4
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
                                            |    |||    ||||| ||     | ||  ||   ||| | ||      |  |   |||   ||   |     | |  | | | || ||  |             |   || |||||| |  |||||||| ||||| || || |||| ||| || || |||||||| ||||| |||||||| || |||||||||||||| || || ||||||||         
--------------------------------------------acacctttcttttacacgctctcagattt--cttttactgccatgccccataagacatgaa--atgactatggtagtgatgt-tcttgctcttct-----------tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA--------

upper sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G130440_T02 (Zea mays), 3'ss of exon 12
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
                                                   | |  |||  | | ||  | ||    |    || | |  |  ||   | | | | |||  ||  ||    | ||    | |||  ||     ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| || || ||||||||         
---------------------------------------------------ttgaatacttattgcaaaaatttctca----tcttttgtggggtccttcgagttatattttttgattgccaataagcctcactgttt-----gttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGA--------

upper sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM5G820733_T01 (Zea mays), 3'ss of exon 4
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
                                                   | |  ||   | | ||  |  |    | |  |  | |  | |  ||  ||| || | |  ||  ||    | ||  | | |||  ||     ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| ||  | ||||||||         
---------------------------------------------------ttgaatatttattgcaaaaagttctcatc--ttttgtggggtcctttgggttatattt--tttgattgccaataagtctcactgttt-----gttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA--------

upper sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G070514_T02 (Zea mays), 3'ss of exon 5
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
                                                   | |  ||   | | ||  |  |    | |  |  | |  | |  ||  ||| || | |  ||  ||    | ||    | |||  ||  |  ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| ||  | ||||||||         
---------------------------------------------------ttgaatatttattgcaaaaagttctcatc--ttttgtggggtcctttgggttatattt--tttgattgccaataagcctcactgtttgttctgt-----tattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA--------

upper sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM5G828253_T01 (Zea mays), 3'ss of exon 1
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
                                                   | |  ||   | | ||  |  |    | |  |  | |  | |  ||  ||| || | |  ||  ||    | ||    | |||  ||     ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| ||  | ||||||||         
---------------------------------------------------ttgaatatttattgcaaaatgttctcatc--ttttgtggggtcctttcggttatattt--tttgattgccaataagcctcactgttt-----gttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA--------

upper sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G382159_T01 (Zea mays), 3'ss of exon 3
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
                                                   | |  ||   | | ||  |  |    |    || | |  |  ||   | | | | |||  ||  ||    | ||    | |||  ||     ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| ||  | ||||||||         
---------------------------------------------------ttgaatatttattgcaaaaagttctca----tcttttgtggggtcctttgcgttatatttttttattgccaataagcctcactgttt-----gttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA--------

upper sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
lower sequence: AT1G54100.2 (Arabidopsis thaliana), 3'ss of exon 12
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttata-gttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
                                                                | ||| ||  |  ||||      |||     |  |   ||   |||   |  |   | | ||  ||| |  || |    ||| | | ||      || ||||  || ||||| ||||| || |||||||  |||||||| || |||||||||||||||||||| || ||||| || || || ||||| ||||||||         
---------------------------------------------------------------gtaagtgctataaaaacaacaacttaactcaatctttccgaccaatataatctactgaaattaattttaatgtgat----ggttttactac----tagACCACTGGGAAGTGACTGTGGCATTGTGAATGTGAACATACCGACGAATGGAGCTGAGATTGGTGGAGCTTTTGGAGGCGAGAAAGCGACTGGTGGTGGT--------

upper sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 3'ss of exon 12
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcc-tataagatgtttgtgg---tgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
                                                           |     ||||  |||| |  ||   |  |||||   || ||||   |  |  ||   ||      |   ||||||    |||||||   | ||| |||  | ||||||||  || ||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| || ||||||||         
----------------------------------------------------------gaagaggcagttgttgaatgtcatgacacataagggattggtggatctagtgcattaatgtccctgtgaaatattt----tgttcata--tatgagtattatacagGCCACATGGAAGTGACTGTGGTATTGTGAATGTAAATATACCTACAAATGGAGCTGAGATTGGTGGAGCTTTTGGGGGAGAAAAGGCAACTGGTGGTGGT--------

upper sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
lower sequence: PP1S237_29V6.1 (Physcomitrella patens), 3'ss of exon 13
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttca-gtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
                                  ||   ||   |||  |  |    |   |||||| | || | | | ||  || | |   || |||        || ||||   | ||  |  || |||  || |||                 ||||| ||   ||| |||||||||||||| || ||||  |||||||| || |||||||| |||||||| || || || |||||||| ||||| || || || ||         
----------------------------------attagtgacaatg--tacgaggaagctacttcatgcacctcatttac-ttcatttcgaatttttaca-----ttttagt--gacaagcaagatgtttctctcgtt-----------------tgcagACCTACAGGCAGTGATTGTGGTATTGTCAATGTGAACATACCAACCAATGGAGCGGAGATTGGGGGAGCATTCGGTGGAGAGAAGGCAACAGGGGGCGGA--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259105|gb|BE347252.1|BE347252
EST:     ATATTCAAGTGGATTGGGCCACGAA                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGGT-A--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|9259105|gb|BE347252.1|BE347252
EST:     ATATTCAAGTGGATTGGGCCACGAA                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGGT-A--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|254335832|gb|GR847360.1|GR847360
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|254335832|gb|GR847360.1|GR847360
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|16346239|gb|BI971834.1|BI971834
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|10255898|gb|BE823664.1|BE823664
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|10255898|gb|BE823664.1|BE823664
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|8827562|gb|BE211292.1|BE211292
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|9258826|gb|BE346973.1|BE346973
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|9258826|gb|BE346973.1|BE346973
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|208161996|gb|GD960109.1|GD960109
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|208161996|gb|GD960109.1|GD960109
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|22932883|gb|BU550022.1|BU550022
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|209718197|gb|BW657829.1|BW657829
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|209718197|gb|BW657829.1|BW657829
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|19934585|gb|BQ079615.1|BQ079615
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|254315874|gb|GR825683.1|GR825683
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|254315874|gb|GR825683.1|GR825683
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|7795093|gb|AW780490.1|AW780490
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|9259222|gb|BE347430.1|BE347430
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|20449673|gb|BQ253797.1|BQ253797
EST:     ATATTTAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|20449673|gb|BQ253797.1|BQ253797
EST:     ATATTTAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|209706452|gb|BW680739.1|BW680739
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|209706452|gb|BW680739.1|BW680739
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|254316180|gb|GR827717.1|GR827717
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|192309268|gb|FG999145.1|FG999145
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAGTGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|192309268|gb|FG999145.1|FG999145
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAGTGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|298186164|gb|HO036797.1|HO036797
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|16349012|gb|BI974607.1|BI974607
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|16349012|gb|BI974607.1|BI974607
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|31466759|gb|CD408787.1|CD408787
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|31466759|gb|CD408787.1|CD408787
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|31463990|gb|CD406018.1|CD406018
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|31463990|gb|CD406018.1|CD406018
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|254316181|gb|GR827718.1|GR827718
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|254316181|gb|GR827718.1|GR827718
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|254335833|gb|GR847361.1|GR847361
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|254335833|gb|GR847361.1|GR847361
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|12773669|gb|BG238596.1|BG238596
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|12773669|gb|BG238596.1|BG238596
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|22932160|gb|BU549299.1|BU549299
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|19936658|gb|BQ080961.1|BQ080961
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|19054093|gb|BM732760.1|BM732760
EST:     AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGCCACGA
genomic: AATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGGT-A--A
EST: gi|5760084|gb|AI965447.1|AI965447
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
EST: gi|5760084|gb|AI965447.1|AI965447
EST:     ATATTCAAGTGGATTGGGCCACGAG                         GTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG
genomic: ATATTCAAGTGGATTGGG-TA--A-gtacttacaa ... aggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC
     aatagtatattttact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG