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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC

Basic information

species Glycine max
transcript GLYMA15G19670.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
                                                |    |||    ||||| ||     | ||  ||   ||| | ||      |  |   |||   ||   |     | |  | | | || ||  |             |   || |||||| |  |||||||| ||||| || || |||| ||| || || |||||||| ||||| |||||||| || |||||||||||||| || || |||||||| 
------------------------------------------------acacctttcttttacacgctctcagattt--cttttactgccatgccccataagacatgaa--atgactatggtagtgatgt-tcttgctcttct-----------tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA

upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G130440_T02 (Zea mays), 3'ss of exon 12
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
                                                       | |  |||  | | ||  | ||    |    || | |  |  ||   | | | | |||  ||  ||    | ||    | |||  ||     ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| || || |||||||| 
-------------------------------------------------------ttgaatacttattgcaaaaatttctca----tcttttgtggggtccttcgagttatattttttgattgccaataagcctcactgttt-----gttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGA

upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM5G820733_T01 (Zea mays), 3'ss of exon 4
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
                                                       | |  ||   | | ||  |  |    | |  |  | |  | |  ||  ||| || | |  ||  ||    | ||  | | |||  ||     ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| ||  | |||||||| 
-------------------------------------------------------ttgaatatttattgcaaaaagttctcatc--ttttgtggggtcctttgggttatattt--tttgattgccaataagtctcactgttt-----gttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA

upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G070514_T02 (Zea mays), 3'ss of exon 5
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
                                                       | |  ||   | | ||  |  |    | |  |  | |  | |  ||  ||| || | |  ||  ||    | ||    | |||  ||  |  ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| ||  | |||||||| 
-------------------------------------------------------ttgaatatttattgcaaaaagttctcatc--ttttgtggggtcctttgggttatattt--tttgattgccaataagcctcactgtttgttctgt-----tattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA

upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM5G828253_T01 (Zea mays), 3'ss of exon 1
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
                                                       | |  ||   | | ||  |  |    | |  |  | |  | |  ||  ||| || | |  ||  ||    | ||    | |||  ||     ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| ||  | |||||||| 
-------------------------------------------------------ttgaatatttattgcaaaatgttctcatc--ttttgtggggtcctttcggttatattt--tttgattgccaataagcctcactgttt-----gttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA

upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G382159_T01 (Zea mays), 3'ss of exon 3
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
                                                       | |  ||   | | ||  |  |    |    || | |  |  ||   | | | | |||  ||  ||    | ||    | |||  ||     ||     |||  |||||||| |  |||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||| || |||||||||||||| ||  | |||||||| 
-------------------------------------------------------ttgaatatttattgcaaaaagttctca----tcttttgtggggtcctttgcgttatatttttttattgccaataagcctcactgttt-----gttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA

upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G54100.2 (Arabidopsis thaliana), 3'ss of exon 12
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttata-gttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
                                                                    | ||| ||  |  ||||      |||     |  |   ||   |||   |  |   | | ||  ||| |  || |    ||| | | ||      || ||||  || ||||| ||||| || |||||||  |||||||| || |||||||||||||||||||| || ||||| || || || ||||| |||||||| 
-------------------------------------------------------------------gtaagtgctataaaaacaacaacttaactcaatctttccgaccaatataatctactgaaattaattttaatgtgat----ggttttactac----tagACCACTGGGAAGTGACTGTGGCATTGTGAATGTGAACATACCGACGAATGGAGCTGAGATTGGTGGAGCTTTTGGAGGCGAGAAAGCGACTGGTGGTGGT

upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 3'ss of exon 12
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcc-tataagatgtttgtgg---tgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
                                                               |     ||||  |||| |  ||   |  |||||   || ||||   |  |  ||   ||      |   |||||||    ||||||   | ||| |||  | ||||||||  || ||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| || |||||||| 
--------------------------------------------------------------gaagaggcagttgttgaatgtcatgacacataagggattggtggatctagtgcattaatgtccctgtgaaatatttt----gttcata--tatgagtattatacagGCCACATGGAAGTGACTGTGGTATTGTGAATGTAAATATACCTACAAATGGAGCTGAGATTGGTGGAGCTTTTGGGGGAGAAAAGGCAACTGGTGGTGGT

upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
lower sequence: PP1S237_29V6.1 (Physcomitrella patens), 3'ss of exon 13
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttca-gtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
                                      ||   ||   |||  |  |    |   |||||| | || | | | ||  || | |   || |||        || ||||  |  ||  |  || |||  || |||                 ||||| ||   ||| |||||||||||||| || ||||  |||||||| || |||||||| |||||||| || || || |||||||| ||||| || || || || 
--------------------------------------attagtgacaatg--tacgaggaagctacttcatgcacctcatttac-ttcatttcgaatttttaca-----ttttagtgac--aagcaagatgtttctctcgtt-----------------tgcagACCTACAGGCAGTGATTGTGGTATTGTCAATGTGAACATACCAACCAATGGAGCGGAGATTGGGGGAGCATTCGGTGGAGAGAAGGCAACAGGGGGCGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054093|gb|BM732760.1|BM732760
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|209706452|gb|BW680739.1|BW680739
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|16346239|gb|BI971834.1|BI971834
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|254316181|gb|GR827718.1|GR827718
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|9259222|gb|BE347430.1|BE347430
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|20449673|gb|BQ253797.1|BQ253797
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTTAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|208328464|gb|GE132128.1|GE132128
EST:     GACCTGGAACTATATTTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: GACCTGGAACTATA-TTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|8827562|gb|BE211292.1|BE211292
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|22932160|gb|BU549299.1|BU549299
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|31466759|gb|CD408787.1|CD408787
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|254335833|gb|GR847361.1|GR847361
EST:     AGTAGTTCAATCTTTACCCAAAGCCCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|22932883|gb|BU550022.1|BU550022
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|7795093|gb|AW780490.1|AW780490
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|207767920|gb|GD740332.1|GD740332
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|31463990|gb|CD406018.1|CD406018
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|9258826|gb|BE346973.1|BE346973
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|5677082|gb|AI938212.1|AI938212
EST:     AGTAGTTCAATCTTTACCCANAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCANACATACCTACANATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|254315874|gb|GR825683.1|GR825683
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|254316180|gb|GR827717.1|GR827717
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|10255898|gb|BE823664.1|BE823664
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|19936658|gb|BQ080961.1|BQ080961
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|254335832|gb|GR847360.1|GR847360
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|12773669|gb|BG238596.1|BG238596
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|192309268|gb|FG999145.1|FG999145
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAGTGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|193407360|gb|FK372693.1|FK372693
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|20812239|gb|BQ296717.1|BQ296717
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTTAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|6455104|gb|AW185787.1|AW185787
EST:     CAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: CAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|208184453|gb|GD982003.1|GD982003
EST:     TATTCAAGTGGATTGG                         GCCACGGGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: TATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|9259105|gb|BE347252.1|BE347252
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAAGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|11412262|gb|BF424273.1|BF424273
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGGGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|16349012|gb|BI974607.1|BI974607
EST:     GTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: GTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|298186164|gb|HO036797.1|HO036797
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|208161996|gb|GD960109.1|GD960109
EST:     AAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|5760084|gb|AI965447.1|AI965447
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|19934585|gb|BQ079615.1|BQ079615
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|209718197|gb|BW657829.1|BW657829
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAGTGGATTGGgtaagtactt ... tatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC
          ataaatagtatatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG