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gtatgccatacttacatcatctagcagtttcactagctttttaaattttattttccttgagatcttaagccctaaaccctctaattatagtttcactgtggatgccacatatgcagGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGAGATGTATCAAGAGCAAATACTGTTCTGATCCCAATCTACTAACATGAGA
species | Glycine max |
transcript | GLYMA15G16830.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA GTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGAEST: gi|22928680|gb|BU545819.1|BU545819
genomic: ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAgtatgccata ... acatatgcagGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGA
EST: ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA GTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCANNNGAEST: gi|21675734|gb|BQ628085.1|BQ628085
genomic: ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAgtatgccata ... acatatgcagGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGA
EST: ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA GTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGAEST: gi|17401109|gb|BM177891.1|BM177891
genomic: ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAgtatgccata ... acatatgcagGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGA
EST: ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA GTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGA
genomic: ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAgtatgccata ... acatatgcagGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGA
atcttaagccctaaaccctctaattatagtttcactgtggatgccacatatgcagGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGAGATGTATCAAGAGCAAATACTGTTCTGATCCCAATCTACTAACATGAGA
ctctaat putative branch site (score: 3)
tctaattatagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccatacttacatcatctagcagtttcactagctttttaaattttattttccttgagatcttaagccctaaaccctctaattatagtttcactgtggatgccacatatgcagGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGAGATGTATCAAGAGCAAATACTGTTCTGATCCCAATCTACTAACATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA