1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgtgtttgatatcagttgattattacttgtggaattataaaatatggttggttagttaaatttgttattctattttgtcttatcaccctcttattttttttgttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCCAAAAGGAGAATTTTTGCACAACATGCT
species | Glycine max |
transcript | GLYMA15G15960.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA GCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCCEST: gi|21993683|gb|BQ785211.1|BQ785211
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCC
EST: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA GCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCCEST: gi|37994708|gb|CF806333.1|CF806333
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCC
EST: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA GCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCCEST: gi|193520683|gb|FK482048.1|FK482048
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCC
EST: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGA GCAAGCTTTTGCAT
genomic: CTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAgtatgtgttt ... ttggctgcagGCAAGCTTTTGCAT
aaatttgttattctattttgtcttatcaccctcttattttttttgttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCCAAAAGGAGAATTTTTGCACAACATGCT
tcttatcaccctctta CT-rich tract
tcttattttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtttgatatcagttgattattacttgtggaattataaaatatggttggttagttaaatttgttattctattttgtcttatcaccctcttattttttttgttggctgcagGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAACCTTCCAAAAGGAGAATTTTTGCACAACATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA