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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctctctctcttaccacgcaacttgcacacatgtcctaatctatgcatgttgtgcattattgccatatttggaaattattggttccttattcaactttttcttacaagtttgcaaatgttcccattcttttattttgattaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTCATGGAAAAGCTTGGTTATCTTAATTATTCTTATACTCCTTGGGTATCTG

Basic information

species Glycine max
transcript GLYMA15G12790.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208257246|gb|GE052363.1|GE052363
EST:     GGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTTAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTTAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|193450924|gb|FK415256.1|FK415256
EST:     GGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTTAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTTAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|207710243|gb|GD689709.1|GD689709
EST:     GGATGATTGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTTAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGGCCGTCGGGTC
genomic: GGATGA-TGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTTAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|208230584|gb|GE029819.1|GE029819
EST:     ATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTTAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGG-TGAGTTGGAC
genomic: ATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTTAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactttttcttacaagtttgcaaatgttcccattcttttattttgattaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTCATGGAAAAGCTTGGTTATCTTAATTATTCTTATACTCCTTGGGTATCTG
                               attcttttattttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatctctctctcttaccacgcaacttgcacacatgtcctaatctatgcatgttgtgcattattgccatatttggaaattattggttccttattcaactttttcttacaagtttgcaaatgttcccattcttttattttgattaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTCATGGAAAAGCTTGGTTATCTTAATTATTCTTATACTCCTTGGGTATCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA