1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttggcctgttataaaccattgtttttcttttaaaattttcatttttattgtagtctatcttgtgttgcacacatgtttctgtgattaattctgcatgcctgattgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGGCAAGGAATTGAGAAGGACTCTGC
species | Glycine max |
transcript | GLYMA15G10030.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGGCAGAGTTTCCTAAAGGGAAAAAAGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTGATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|19934696|gb|BQ079726.1|BQ079726
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|58020712|gb|CX707454.1|CX707454
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|151404598|gb|EV274412.1|EV274412
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|6567265|gb|AW234876.1|AW234876
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|58020885|gb|CX707627.1|CX707627
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|193639977|gb|FK590138.1|FK590138
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCT-AAGGG-AAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|7028742|gb|AW458525.1|AW458525
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|17401651|gb|BM178433.1|BM178433
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: GGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|58020543|gb|CX707285.1|CX707285
genomic: GGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|15204199|gb|BI426967.1|BI426967
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAAGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTGATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|151395410|gb|EV265287.1|EV265287
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATEST: gi|17400275|gb|BM177057.1|BM177057
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
EST: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAG ACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
genomic: AGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGgttggcctgt ... tgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGAT
cttgtgttgcacacatgtttctgtgattaattctgcatgcctgattgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGGCAAGGAATTGAGAAGGACTCTGC
tgattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggcctgttataaaccattgtttttcttttaaaattttcatttttattgtagtctatcttgtgttgcacacatgtttctgtgattaattctgcatgcctgattgtgctccagACTGTTGTTCTTATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGGCAAGGAATTGAGAAGGACTCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA