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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatatacttattttcaggagattacataatattaaatagataaggggaaacaataatgacaaattttgttaaatatttgtagGCTTCAGTATTGGAAATATATAATGAGACCATCAGAGATTTGTTATCATCAAATCGGTCAAGTGGTATTGACTCAACACGTACAGAAAACGGTGTTCCTG

Basic information

species Glycine max
transcript GLYMA15G06880.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06880.1 (Glycine max), 3'ss of exon 12
lower sequence: AT4G21270.1 (Arabidopsis thaliana), 3'ss of exon 12
------------gttaatatacttattttcaggagattacataatattaaatagataaggggaaacaataatgacaaattt-tgttaaatatttgtagGCTTCAGTATTGGAAATATATAATGAGACCATCAGAGATTTGTTATCATCAAATCGGTCAAGTGGTATTGACTCAACACGTACAGAAAACGGTGTTCCTG
               |||||   |  ||        |  ||| |  ||   |  |              | |  ||||||| | || || |  ||||||  ||  | ||||| ||||||||||||||||||||||||||| | ||  |||||||  ||| |  ||| ||||     ||  |||| |  ||     | |
gtgtacatttcatccaatattgctgattgatttcattggcatcaccttttttctaactttatttgttggattttcaaatttatctttaaaa--tgtagGTATCGATGTTGGAGATATATAATGAGACCATCAGAGATTTGCTCTCTACAAATCGAACAACTTCTATGGACTTGGTGCGAGCAGACAGTGGCACCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattaaatagataaggggaaacaataatgacaaattttgttaaatatttgtagGCTTCAGTATTGGAAATATATAATGAGACCATCAGAGATTTGTTATCATCAAATCGGTCAAGTGGTATTGACTCAACACGTACAGAAAACGGTGTTCCTG
                    aaacaataatgacaaa  TA-rich tract