1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cttaagagtccattcaacatgctcttgtttgtatatagttcaataattgaagccttgtcatgtaatatcgatattcaaagtttttggttttttttttcagGGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAATGAACTGAAGGTTGCTCCTGGTACTGGCAGATATATAAAAATGCCACCCT
species | Glycine max |
transcript | GLYMA15G06100.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCCACCACTCCAAACTGGACACAAATGTCTATGAGGGAAGGAGTGGAAAG GGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAATEST: gi|16349229|gb|BI974824.1|BI974824
genomic: CCCACCACTCCAAACTGGACACAAATGTCTATGAGGGAAGGAGTGGAAAGgtactgattt ... tttttttcagGGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAAT
EST: CCCACCACTCCAAACTGGACACAAATGTCTATGAGGGAAGGAGTGGAAAG GGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAATEST: gi|37995958|gb|CF807547.1|CF807547
genomic: CCCACCACTCCAAACTGGACACAAATGTCTATGAGGGAAGGAGTGGAAAGgtactgattt ... tttttttcagGGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAAT
EST: CCCACCACTCCNAACTGGACACAAATGTCTATTAGGGAAGGAGTGGAAAG GGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAATEST: gi|298175277|gb|HO018158.1|HO018158
genomic: CCCACCACTCCAAACTGGACACAAATGTCTATGAGGGAAGGAGTGGAAAGgtactgattt ... tttttttcagGGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAAT
EST: CCCACCACTCCAAACTGGACACAAATGTCTATGAGGGAAGGAGTGGAAAG GGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAAT
genomic: CCCACCACTCCAAACTGGACACAAATGTCTATGAGGGAAGGAGTGGAAAGgtactgattt ... tttttttcagGGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAAT
attgaagccttgtcatgtaatatcgatattcaaagtttttggttttttttttcagGGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAATGAACTGAAGGTTGCTCCTGGTACTGGCAGATATATAAAAATGCCACCCT
tttttggttttttttt CT-rich tract
atattcaaagtttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaagagtccattcaacatgctcttgtttgtatatagttcaataattgaagccttgtcatgtaatatcgatattcaaagtttttggttttttttttcagGGAAAAATCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAATGAACTGAAGGTTGCTCCTGGTACTGGCAGATATATAAAAATGCCACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - -ccattca
- - - - - - - - -catgctc
- - - - - - - - - - - - -tgtttgt