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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcatactgtttttctatttgttggtttaagttaatttcatttggaaataatgagttttaaattttcagGTTTTTCGTATTTGGCTCTTTCTACAACCGCGGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAG

Basic information

species Glycine max
transcript GLYMA15G05080.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05080.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 12
gtatggtcatactgtt--tttctatttgttggtttaagttaatttcatttgga--aataatgagtttta---aattttcagGTTTTTCGTATTTGGCTCTTTCTACAACCGCGGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAG
||| || | ||   ||  | | | ||  || | |  | || || |  ||   |  |||     | |  |   | |||||||||||||| || |||||||| ||| |||| || || |||||||| || || ||||| ||||| |||||  | ||||||
gtagggccttataattactgtttcttatttagctagaatttatatgtttcatattaattccctgctccacttatttttcagGTTTTTCATACTTGGCTCTCTCTGCAACAGCAGCATTTATGCAGCATCTCATCCTATACTTCTGGAACAGATTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480752|gb|BG510095.1|BG510095
EST:     TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACG                         GTTTTTCGTATTTGGCTCTTTCTACAACCGCGGCTTTTATGCAACACCTTA
genomic: TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACGgtatggtcat ... aaattttcagGTTTTTCGTATTTGGCTCTTTCTACAACCGCGGCTTTTATGCAACACCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttgttggtttaagttaatttcatttggaaataatgagttttaaattttcagGTTTTTCGTATTTGGCTCTTTCTACAACCGCGGCTTTTATGCAACACCTTATCCTGTACTTTTGGAATCGGTTTGAG
               agttaat  putative branch site (score: 4)
                                                ttttc  putative PPT
                 ttaatttcatttggaa  TA-rich tract