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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatatttcttctgcaaggcctgtctttgagtgtcatatttctttagctgggaaagtatctttactttctcttccctcggttacttacttgtgtatctttaaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG

Basic information

species Glycine max
transcript GLYMA15G04500.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231271|gb|BE800168.1|BE800168
EST:     CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAG                         GTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
genomic: CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGgttatatttc ... taaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
EST: gi|213604211|gb|DB974253.1|DB974253
EST:     CTTGGAAACCCAG                         GTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
genomic: CTTGGAAACCCAGgttatatttc ... taaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
EST: gi|21676124|gb|BQ628475.1|BQ628475
EST:     CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAG                         GTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
genomic: CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGgttatatttc ... taaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
EST: gi|22928257|gb|BU545396.1|BU545396
EST:     CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAG                         GTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
genomic: CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGgttatatttc ... taaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatctttactttctcttccctcggttacttacttgtgtatctttaaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
                           tacttac  putative branch site (score: 1)
                                       tatcttt  putative PPT
                                     tgtatctttaaattt  TA-rich tract