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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaagaggctatgcagaattattgagttcaggttggactcagtaatctcctttttgctttggttgtgaacaaagtttattattttgtatgtggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG

Basic information

species Glycine max
transcript GLYMA15G03190.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688837|gb|BG155173.1|BG155173
EST:     CTAATGTAACTACTG-ACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|58016071|gb|CX702813.1|CX702813
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|57574899|gb|CX547874.1|CX547874
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|15815082|gb|BI787357.1|BI787357
EST:     GTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: GTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|31561922|gb|CD487760.1|CD487760
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|192295054|gb|FG986773.1|FG986773
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|51335818|gb|CO979684.1|CO979684
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|214010103|gb|DB989475.1|DB989475
EST:     CTAATGTAACTACTGAACCAAGTAAGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATAGTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcctttttgctttggttgtgaacaaagtttattattttgtatgtggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG
                      aacaaagtttattatt  TA-rich tract