1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaattttatggtagctctgacatcaagtatagtctttagttaggcattgcagtagcatttatattaacttttgagttccctcagACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGG
species | Glycine max |
transcript | GLYMA15G02640.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAG ACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATEST: gi|17519644|gb|BM188686.1|BM188686
genomic: CCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAGgtaattttat ... gttccctcagACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTAT
EST: CCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAG ACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATEST: gi|26057605|gb|CA800519.1|CA800519
genomic: CCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAGgtaattttat ... gttccctcagACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTAT
EST: CCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAG ACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTAT
genomic: CCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAGgtaattttat ... gttccctcagACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTAT
tagtctttagttaggcattgcagtagcatttatattaacttttgagttccctcagACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGG
tattaac putative branch site (score: 1)
ttccctc putative PPT
atttatattaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttatggtagctctgacatcaagtatagtctttagttaggcattgcagtagcatttatattaacttttgagttccctcagACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA