1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttttttctgtattgtttaatttttcatttttgtaaagatgctattcttgcactatattactagttcaccctaaagaggaatactgtttttgaacgtgcagCTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCAAGGTTGCTATCTTCAACCCATCAGCCTTGCTTCTTGAACCCAAAAGAAA
species | Glycine max |
transcript | GLYMA15G02400.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCTTCACCGTGGGCCCAGTTAATGGCAGAAATTGTTACATTCCATTCCAT CTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCAEST: gi|15284818|gb|BI468709.1|BI468709
genomic: GCTTCACCGTGGGCCCAGTTAATGGCAGAAATTGTTACATTCCATTCCATgtaagttctt ... gaacgtgcagCTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCA
EST: GCTTCACCGTGGGCCCAGTTAATGGCAGAAATTGTTACATTCCATTCCAT CTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCAEST: gi|151400140|gb|EV269954.1|EV269954
genomic: GCTTCACCGTGGGCCCAGTTAATGGCAGAAATTGTTACATTCCATTCCATgtaagttctt ... gaacgtgcagCTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCA
EST: GCTTCACCGTGGGCCCAGTTAATGGCAGAAATTGTTACATTCCATTCCAT CTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCAEST: gi|151406712|gb|EV276527.1|EV276527
genomic: GCTTCACCGTGGGCCCAGTTAATGGCAGAAATTGTTACATTCCATTCCATgtaagttctt ... gaacgtgcagCTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCA
EST: GCTTCACCGTGGGCCCAGTTAATGGCAGAAATTGTTACATTCCATTCCAT CTGATAAACGAGGGAGAGAA-AGGGGTTGTGATAACTGATCGGATG
genomic: GCTTCACCGTGGGCCCAGTTAATGGCAGAAATTGTTACATTCCATTCCATgtaagttctt ... gaacgtgcagCTGATAAACGAGGGAGAGAAGAGGG-TTGTGATAACTGATCGGATG
cttgcactatattactagttcaccctaaagaggaatactgtttttgaacgtgcagCTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCAAGGTTGCTATCTTCAACCCATCAGCCTTGCTTCTTGAACCCAAAAGAAA
ccctaaa putative branch site (score: 3)
tatattacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttctgtattgtttaatttttcatttttgtaaagatgctattcttgcactatattactagttcaccctaaagaggaatactgtttttgaacgtgcagCTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCAAGGTTGCTATCTTCAACCCATCAGCCTTGCTTCTTGAACCCAAAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA