Sequence
atgc intronic sequence ATGC exonic sequencegtctctagaatactttctgaatttaatttgagaaacttttccattgaatattattgtatgtcttcatcttttcctatggattctacagGAAGCAGAGGCTAAAGCTGCAACTGCAGAGGAGAGAGAACGATCTGTGAATGAACGCTTATCTCAGACCTTATCTCGAATTAATGTCCTTGAGGCTCAG
Basic information
species | Glycine max |
transcript | GLYMA15G01980.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G01980.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv16s0098g00540.t01 (Vitis vinifera), 3'ss of exon 11
--gtctctagaatactttctgaatttaatttgagaaacttttccattg--aatat-tattgtatgtcttcat-cttttcctatggattctacagGAAGCAGAGGCTAAAGCTGCAACTGCAGAGGAGAGAGAACGATCTGTGAATGAACGCTTATCTCAGACCTTATCTCGAATTAATGTCCTTGAGGCTCAG
| | || | || || | ||||| | | || |||| | || || | ||| || ||||| || |||||||| || |||||||||||||||||||| ||||| | ||| ||||||| ||||||||||| || || ||||||||| || | ||||||||||| || |||
gtttgtttaaatagtttgctacctacaatttttgtattttagaaattgtcagcatgctttacaattctgaattctttttttactataactacagGAGGCGGAGGCTAAAGCTGCAACTGCTGAGGAAAAAGAGAGATCTGTAAATGAACGCTTGTCGCAAACCTTATCTAGAGTAAATGTCCTTGAAGCACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208197689|gb|GD998896.1|GD998896EST: AAGCTGAAGCTTGGGCTGCTGTTGAAAGAACTCTTAATTCTCGACTTCAG GAAGCAGAGGCTAAAGCTGCAACTGCAG
genomic: AAGCTGAAGCTTGGGCTGCTGTTGAAAGAACTCTTAATTCTCGACTTCAGgtctctagaa ... gattctacagGAAGCAGAGGCTAAAGCTGCAACTGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacttttccattgaatattattgtatgtcttcatcttttcctatggattctacagGAAGCAGAGGCTAAAGCTGCAACTGCAGAGGAGAGAGAACGATCTGTGAATGAACGCTTATCTCAGACCTTATCTCGAATTAATGTCCTTGAGGCTCAG
attgaatattattgta TA-rich tract