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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagtaatcacaattcctatggatttccatttcttgaacttcagtgattgcaaatttgctcaaacggtttgtaaactgatatgtgatgtacttctttccagGGAGAAAAAAACCACGAGACTGATGGGTGATAGAGTAGCGGACCTGGAAATGCAG

Basic information

species Glycine max
transcript GLYMA15G00770.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11411972|gb|BF423983.1|BF423983
EST:     GTGAAAAATGAGGACATTTGGAAAACTAAGATACTTGCGATTGAAGAGAG                         GGAGNNNNNNNCCACGAGACTGATGGGTGATAGAGTAGCGGACCTGGAAAT
genomic: GTGAAAAATGAGGACATTTGGAAAACTAAGATACTTGCGATTGAAGAGAGgtatgctttt ... ttctttccagGGAGAAAAAAACCACGAGACTGATGGGTGATAGAGTAGCGGACCTGGAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcaaatttgctcaaacggtttgtaaactgatatgtgatgtacttctttccagGGAGAAAAAAACCACGAGACTGATGGGTGATAGAGTAGCGGACCTGGAAATGCAG
                           aactgat  putative branch site (score: 3)
 tacttctttcc  putative PPT
 tttgtaaa  TA-rich tract