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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatctcttgctttttctattcatattcttccatagcagttaaactgacagaagtagctagatgatgattaaatcagtcatactaaaatgtcttcttaattgttatacttgtgcaataatttacttatgttagtattgtattttctgctgatatccacatgatagGTTTCGAGCATATCAGCAGACCTTGAAAAAGGAGGGTTGATTTGGTCATCAACCTTGCCCAAACCTGGCAGGGACGGACTTCTCCAGCTTCTGCATGATA

Basic information

species Glycine max
transcript GLYMA14G40480.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13240030|gb|BG359348.1|BG359348
EST:     GAGGACCGACTGGAATTATTGCCACAAACCTCTATTG-GCAGAAGAAACT                         GTTACGAGCATATCAGCAGACCTTGAAAAAGGAGGGTTGATTTGGTCATCA
genomic: GAGGACCGACTGGAATTATTGCCACAAACCTCTATTGTGCAGAAGAAACTgtatgtatct ... cacatgatagGTTTCGAGCATATCAGCAGACCTTGAAAAAGGAGGGTTGATTTGGTCATCA
EST: gi|9203679|gb|BE329903.1|BE329903
EST:     GAGGACCGACTGGAATTATCGCCACAAACCTCTATTGTGCAGAAGAAACT                         GTTTCGAGCATATCAGCAGACCTTGAAAACGGAGGGTTGATTTCGTCATCA
genomic: GAGGACCGACTGGAATTATTGCCACAAACCTCTATTGTGCAGAAGAAACTgtatgtatct ... cacatgatagGTTTCGAGCATATCAGCAGACCTTGAAAAAGGAGGGTTGATTTGGTCATCA
EST: gi|15337357|gb|BI498013.1|BI498013
EST:     GAGGACCGACTGGAATTATTGCCACAAACCTCTATTGTGCAGAAGAAACT                         GTTTCGAGCATATCAGCAGACCTTGAAAAAGGAGGGTTGATTTGGTCATCA
genomic: GAGGACCGACTGGAATTATTGCCACAAACCTCTATTGTGCAGAAGAAACTgtatgtatct ... cacatgatagGTTTCGAGCATATCAGCAGACCTTGAAAAAGGAGGGTTGATTTGGTCATCA
EST: gi|22928670|gb|BU545809.1|BU545809
EST:     GAGGCCCGACTGGAATTATTGCCACAAACCTCTATTGTGCAGAAGAAACT                         GTTTCGAGCATATCAGCAGACCTTGAAAAAGGAGGGTTGATTTGGTCATCA
genomic: GAGGACCGACTGGAATTATTGCCACAAACCTCTATTGTGCAGAAGAAACTgtatgtatct ... cacatgatagGTTTCGAGCATATCAGCAGACCTTGAAAAAGGAGGGTTGATTTGGTCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcaataatttacttatgttagtattgtattttctgctgatatccacatgatagGTTTCGAGCATATCAGCAGACCTTGAAAAAGGAGGGTTGATTTGGTCATCAACCTTGCCCAAACCTGGCAGGGACGGACTTCTCCAGCTTCTGCATGATA
                                   tgctgat  putative branch site (score: 3)
 ataatttacttatgtt  TA-rich tract