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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaagatgttaatatttttgttgggtttgatttcatgagtagtatttatattttatagcatcaaggggagagcaggtttcaatgatgtgctgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAG

Basic information

species Glycine max
transcript GLYMA14G36280.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36280.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 12
gaaagatgttaatatttttgttgggtttgatttcatgagtagtatttatattttatagcatcaagggga--gagcaggtttcaatgatgtgctgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAG
  ||  ||  |  | | ||||| |  |  |    ||| |||  | || | |||   |  |  || || |   |  | || |    ||  |    ||  ||||||||||||||||||||| ||||| ||||| || ||| ||||||| || || ||||||||||| || ||||| |||||||||||||| ||||||||||| |
--aaactgagataaatattgttcgcatataaaggatgggtataaattgtttttagcatgagaaatggaattaattatgtgttgtggaattttctttctacagGGTATTGATGGTTCTAGAGTTGAAAAGGTTCTTGAATCAGTTCACATTGCAGCCAATAAAAACACTGTTCCTGGGGATGTGTCTGCCATGGTTCCTGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269481|gb|BM885737.1|BM885737
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAG                         GGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAG
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAG
EST: gi|6915301|gb|AW396831.1|AW396831
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAG                         GGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
EST: gi|7796703|gb|AW782097.1|AW782097
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAG                         GGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
EST: gi|19348549|gb|BM893081.1|BM893081
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAG                         GGTATTGATGGTTCTAGGGTTGAGAAG
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAG
EST: gi|105631822|gb|DW246196.1|DW246196
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAG                         GGTATTGATGGTTCTAGGGTTGAGAAGGT
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGT
EST: gi|151409184|gb|EV278992.1|EV278992
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAG                         GGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
EST: gi|192315079|gb|FK010449.1|FK010449
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAG                         GGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
EST: gi|13240115|gb|BG359424.1|BG359424
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAG                         GGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
EST: gi|192298247|gb|FG992067.1|FG992067
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTGGCGAACTTAAGAAACAAG                         GGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTGGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatattttatagcatcaaggggagagcaggtttcaatgatgtgctgtttgacagGGTATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAG
     ttttata  TA-rich tract