Sequence
atgc intronic sequence ATGC exonic sequencegtatggaatacctgatacaacaaatttatttcttctcataatttttcttattatatttatttttcggaatatattgcagGAAGACAGGCAACGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCCAAAGAGGACCAAGAAGTGAATTCAAAACAG
Basic information
species | Glycine max |
transcript | GLYMA14G34810.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G34810.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G22275.1 (Arabidopsis thaliana), 3'ss of exon 12
gtatggaatacctgatacaacaaatttatttcttctcataatttttcttattatatttatttttcggaatatattgcagGAAGACAGGCAACGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCCAAAGAGGACCAAGAAGTGAATTCAAAACAG
|| || | | || ||| | || | | || ||| | || | || | || | ||||||||||| |||||| | |||||| ||||||| |||||||| |||||||||||||| || ||||| |||||||| || ||||| ||
-------gtaagtgctttttaagatccatt--ataagatgaatctt--tatgagtttaacttatgggctaaccttgcagGAAGAGAGGCAAAGAGCTTTGGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAGGAGCAAGAAGTAAACTCAAACAAG
upper sequence: GLYMA14G34810.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G22260.1 (Arabidopsis thaliana), 3'ss of exon 12
gtatggaatacctgatacaacaaatttatttcttctcataatttttcttattatatttatttttcggaatatattgcagGAAGACAGGCAACGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCCAAAGAGGACCAAGAAGTGAATTCAAAACAG
|| || | || || | | | | | |||| || | | | || | ||||||||||| |||||||| |||||| ||||||| |||||||| |||||||||||||| || || || |||||||| || ||||| ||
-------gtaagtgctttcttaag---atccaatataagatgaatctttatgggtttaactaatgggctaaccttgcagGAAGAGAGGCAACGAGCTTTGGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGCAAGAAGTAAACTCAAACAAG
upper sequence: GLYMA14G34810.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv18s0001g05600.t01 (Vitis vinifera), 3'ss of exon 12
gtatggaatacct---gatacaacaaatttatttcttctcataatttttcttattatatttatttttcggaatatattgcagGAAGACAGGCAACGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCCAAAGAGGACCAAGAAGTGAATTCAAAACAG
||||| | | || | ||| || | | || ||| || | || || ||| |||||| ||||||||||| || | ||||| ||||| |||||||||||||| ||||||||||| | ||||||| | |||||||||||||||| ||
gtatgtagttcccttaagtgcaataagaatgtcattttatgtaactt-------aaccttgatcttt----gtatattacagGAAGACAGACAGAGAGCTTTATTGCAATTGCAGTGGAAAGTAATGAGTGACAAAACACAAGAGGATCCAGAAGTGAATTCAAAAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatttcttctcataatttttcttattatatttatttttcggaatatattgcagGAAGACAGGCAACGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCCAAAGAGGACCAAGAAGTGAATTCAAAACAG
ataatttttcttatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggaatacctgatacaacaaatttatttcttctcataatttttcttattatatttatttttcggaatatattgcagGAAGACAGGCAACGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCCAAAGAGGACCAAGAAGTGAATTCAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT