1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtgaaactaaattttggatgagaaagtgaatccccacccccttgtttttattgtttatctagaaggtgtgttgagatttcaagtatttgagaactaatagtccttactattttcagTTGATAGAGCACGCAAAAGAAGATGAGACTTTGGAAGAACTGCGGGCTAAAACAGCTGCCCAATTTAGTGATGAACAGAATGGATTTCAAAGTGCTATGA
species | Glycine max |
transcript | GLYMA14G24510.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAAATGCCCGCGAGGCACTTGCAAGCACCCATCTCTATGGGAGGCACCTG TTGATAGAGCACGCAAAAGAAGATGAGACTTTGGAAGAACTGCGGGCTAAAEST: gi|31465570|gb|CD407598.1|CD407598
genomic: AAAATGCCCGCGAGGCACTTGCAAGCACCCATCTCTATGGGAGGCACCTGgtaagtgaaa ... ctattttcagTTGATAGAGCACGCAAAAGAAGATGAGACTTTGGAAGAACTGCGGGCTAAA
EST: AAAATGCCCGCGAGGCACTTGCAAGCACCCATCTCTATGGGAGGCACCTG TTGATAGAGCACGCAAAAGAAGATGAGACTTTGGAAGAACTGCGGGCTAAA
genomic: AAAATGCCCGCGAGGCACTTGCAAGCACCCATCTCTATGGGAGGCACCTGgtaagtgaaa ... ctattttcagTTGATAGAGCACGCAAAAGAAGATGAGACTTTGGAAGAACTGCGGGCTAAA
gaaggtgtgttgagatttcaagtatttgagaactaatagtccttactattttcagTTGATAGAGCACGCAAAAGAAGATGAGACTTTGGAAGAACTGCGGGCTAAAACAGCTGCCCAATTTAGTGATGAACAGAATGGATTTCAAAGTGCTATGA
tccttac putative branch site (score: 2)
tccttactattttc CT-rich tract
ttactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaaactaaattttggatgagaaagtgaatccccacccccttgtttttattgtttatctagaaggtgtgttgagatttcaagtatttgagaactaatagtccttactattttcagTTGATAGAGCACGCAAAAGAAGATGAGACTTTGGAAGAACTGCGGGCTAAAACAGCTGCCCAATTTAGTGATGAACAGAATGGATTTCAAAGTGCTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC