1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aacttggaggaactaaaaacatatttaagcctaatatattaatgacattgcaatttactgttaaatatataaagtttaatgtattttattttctaaacagGCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAG
species | Glycine max |
transcript | GLYMA14G07850.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCTACAAAGAAG GCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGATEST: gi|213594004|gb|DB983184.1|DB983184
genomic: TTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCTACAAAGAAGgtaactacat ... ttctaaacagGCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGAT
EST: GATCGCTACAAAGAAG GCTTGGTATGAAGCTTTGATTAGACAAGAAGAACTTTTGGCATACATTGATEST: gi|151401385|gb|EV271199.1|EV271199
genomic: GATCGCTACAAAGAAGgtaactacat ... ttctaaacagGCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGAT
EST: CTGTTTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCTACAAAGAAG GCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGATEST: gi|209700986|gb|BW664167.1|BW664167
genomic: CTGTTTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCTACAAAGAAGgtaactacat ... ttctaaacagGCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGAT
EST: CTGTTTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCTACAAAGAAG GCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGATEST: gi|120532823|gb|EH260956.1|EH260956
genomic: CTGTTTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCTACAAAGAAGgtaactacat ... ttctaaacagGCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGAT
EST: CTGTTTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCGACAAAGAAG GCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGATEST: gi|18848900|gb|BM568010.1|BM568010
genomic: CTGTTTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCTACAAAGAAGgtaactacat ... ttctaaacagGCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGAT
EST: CTGTTTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCTACAAAGAAG GCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGAT
genomic: CTGTTTATCGTGTGGACGCATTGGAAGCGGAACTGATCGCTACAAAGAAGgtaactacat ... ttctaaacagGCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGAT
cattgcaatttactgttaaatatataaagtttaatgtattttattttctaaacagGCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAG
gtttaat putative branch site (score: 4)
ttttattttct putative PPT
aatttactgttaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttggaggaactaaaaacatatttaagcctaatatattaatgacattgcaatttactgttaaatatataaagtttaatgtattttattttctaaacagGCTTTGTATGAAGCTTTGATTAGACAAGAAGAACTTCTGGCATACATTGATAGTCAGGAAAGAAGCAAATTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - tggagga
- - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - -cattgca