1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttatctctttgcattaatttgtttttgtatgaatgtatcttactggttaactcttggcaatcatgagtgtgtacttctcttgcacagCACATCTGTCATTGAGGAGAGTTTTGGTTATCTAGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGA
species | Glycine max |
transcript | GLYMA14G02380.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTG CACATCTGTCATTGAGGAGAGTTTTGGTTATCTAGATGCACCGGTTGAGAGEST: gi|209727471|gb|BW663732.1|BW663732
genomic: GTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTGgtttatctct ... tcttgcacagCACATCTGTCATTGAGGAGAGTTTTGGTTATCTAGATGCACCGGTTGAGAG
EST: GTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTG CACATCTGTCATTGAGGAGAGTTTTGGTTATCTAGATGCACCGGTTGAGAGEST: gi|151398119|gb|EV267997.1|EV267997
genomic: GTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTGgtttatctct ... tcttgcacagCACATCTGTCATTGAGGAGAGTTTTGGTTATCTAGATGCACCGGTTGAGAG
EST: GTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTG CACATCTGTCATTGAGGAGAGTTTTGGTTATCTAGATGCACCGGTTGAGAG
genomic: GTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTGgtttatctct ... tcttgcacagCACATCTGTCATTGAGGAGAGTTTTGGTTATCTAGATGCACCGGTTGAGAG
atgtatcttactggttaactcttggcaatcatgagtgtgtacttctcttgcacagCACATCTGTCATTGAGGAGAGTTTTGGTTATCTAGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGA
ggttaac putative branch site (score: 3)
tacttctctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatctctttgcattaatttgtttttgtatgaatgtatcttactggttaactcttggcaatcatgagtgtgtacttctcttgcacagCACATCTGTCATTGAGGAGAGTTTTGGTTATCTAGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT