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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaggttgcattttcaagtagggaaatttgtggtttgggccaaactccctttcctaatttagcggattaattgatctgatctttttttactttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATGCAGAGGTTCAGTATATAACTAAATGAGGGATGAGCACTAGCCAAAACA

Basic information

species Glycine max
transcript GLYMA14G02220.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31466922|gb|CD408950.1|CD408950
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|192301996|gb|FG995166.1|FG995166
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|31457278|gb|CD399306.1|CD399306
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|31306949|gb|CD392152.1|CD392152
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|5760885|gb|AI966248.1|AI966248
EST:     AACGTCAAAACCAAGAATATGATGAGGAATGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|12773062|gb|BG237989.1|BG237989
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|209705501|gb|BW673522.1|BW673522
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|31456589|gb|CD398617.1|CD398617
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|7028072|gb|AW457855.1|AW457855
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|8403114|gb|BE058748.1|BE058748
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|10253204|gb|BE820970.1|BE820970
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|9898910|gb|BE607878.1|BE607878
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTANAAGGAGCTAAAGTGCTTGAATGGTTGAAAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccctttcctaatttagcggattaattgatctgatctttttttactttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATGCAGAGGTTCAGTATATAACTAAATGAGGGATGAGCACTAGCCAAAACA
                             tctgatctttttttac  CT-rich tract
                                 atctttttttacttt  TA-rich tract