1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttgttgttgttgtttatgattctgattatgtatggatctttccacaatattgaatgcgttctttttcgattcagttaatctaaaagtcatcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAGGAGGTGGTGCATCTGCCCTTGTTGTTGAGCTTCAGTAAGACCTATTTC
species | Glycine max |
transcript | GLYMA14G00760.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|192329989|gb|FK021575.1|FK021575
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|17021784|gb|BM092818.1|BM092818
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|15812294|gb|BI784569.1|BI784569
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|31472565|gb|CD414593.1|CD414593
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|151406879|gb|EV276694.1|EV276694
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|298184901|gb|HO030114.1|HO030114
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|192313001|gb|FK003653.1|FK003653
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|31472065|gb|CD414093.1|CD414093
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTCCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|192313633|gb|FK007617.1|FK007617
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|12689377|gb|BG155774.1|BG155774
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|254347470|gb|GR853719.1|GR853719
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: CTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|192328380|gb|FK020091.1|FK020091
genomic: CTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGA-GAATGGGAAGEST: gi|120491401|gb|EH219568.1|EH219568
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAG
EST: CTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|15203843|gb|BI426611.1|BI426611
genomic: CTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|209708680|gb|BW678861.1|BW678861
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAAEST: gi|10256517|gb|BE824283.1|BE824283
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAEST: gi|192313632|gb|FK007616.1|FK007616
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
caatattgaatgcgttctttttcgattcagttaatctaaaagtcatcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAGGAGGTGGTGCATCTGCCCTTGTTGTTGAGCTTCAGTAAGACCTATTTC
atctaaa putative branch site (score: 3)
ttaatctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttgttgttgtttatgattctgattatgtatggatctttccacaatattgaatgcgttctttttcgattcagttaatctaaaagtcatcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGAGGAGGTGGTGCATCTGCCCTTGTTGTTGAGCTTCAGTAAGACCTATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- -gttgttg
- - - - - - - - - gattctg
- - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - ttccaca
- - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgc