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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgaaagaaacttctcccatgctaatgcaaaatgcaatataaaaaagacataagattcctcaacaataaaatgtcatttctgactctcaatactcttcatgttccagTCTTGTGCAGGGAGGCGTAGACTCCAGAAATTTGTTCCACAATTATATCATGGTGTGGATACAGGATATGCAACTTAGTTTGCTTGATTTATGTAAAGCA

Basic information

species Glycine max
transcript GLYMA14G00660.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00660.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv12s0057g01510.t01 (Vitis vinifera), 3'ss of exon 12
gtttgtgaaagaaacttctc-ccatgctaatgcaaaatg----caatataaaa----aagacataagattcctcaaca-ataaaatgtca--------tttctgactctcaatactcttcatgttccagTCTTGTGCAGGGAGGCGTAGACTCCAGAAATTTGTTCCACAATTATATCATGGTGTGGATACAGGATATGCAACTTAGTTTGCTTGATTTATGTAAAGCA
||||||| | ||| ||||       |  ||    |||||    |||   | ||    ||| ||    ||| |  || | ||||||  | |        ||| ||||  |  ||  | ||  || | ||| |  |||||||| || || ||||| |  ||||||||||| ||||| || ||||||||||||||||||||||| || |  ||||||||  | || ||||||
gtttgtggatgaagcttcctattgggagaaaaagaaatgttgccaactgagaatgtgaaggcagctaatttcataatatataaaaactaaaagccttctttgtgacattatatgtttttt-tgcttcagGCCAGTGCAGGGTGGTGTTGACTCAAAGAATTTGTTCCATAATTACATAATGGTGTGGATACAGGATATGCAGCTAAACTTGCTTGAGCTCTGCAAAGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207785577|gb|GD755702.1|GD755702
EST:     CTAGTTGCAGCGGCAGATTTTGAACGGGNTTTGGAATCATGGAATATAAG                         TCTTGTGCAGTGAGGCGTAGACTCCAGAAATTTGTTCCACAATTTATATCA
genomic: CTAGTTGCAGCGGCAGATTTTGAACGGGATTTGGAATCATGGAATATAAGgtttgtgaaa ... catgttccagTCTTGTGCAGGGAGGCGTAGACTCCAGAAATTTGTTCCACAATT-ATATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattcctcaacaataaaatgtcatttctgactctcaatactcttcatgttccagTCTTGTGCAGGGAGGCGTAGACTCCAGAAATTTGTTCCACAATTATATCATGGTGTGGATACAGGATATGCAACTTAGTTTGCTTGATTTATGTAAAGCA
                         ttctgac  putative branch site (score: 2)
                                      tactcttc  putative PPT
            aataaaatgtcattt  TA-rich tract