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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcctctcattgttataggcttatagctgtcttcgtattgaaataaatttgctctagggaatacttggtttagttggaatttaaacaattggtatttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG

Basic information

species Glycine max
transcript GLYMA13G43680.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 3'ss of exon 12
----atcctctcattgttataggcttatagctgtcttcgtattgaaataaatttgctctagggaatacttggtttagttggaatttaaacaattggtatttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
      ||| | |||  |  |   |   |      | |  ||   | |   || ||  |    |||| |   | |  | |   ||| ||  ||      | ||||| ||||  | | | || || ||||||||||||||| | || |||||||| |   || |||||||||| ||||  |||||||| ||||||||||||||||
taaggaccttttattaatg-aatttggcaaagaattgcacatcatattctgttggcatttatcaatattgtatcttctgg---tttgaatgatccaatatgcagGAGAAGAAAACTATTCGCCCTACATTTTCAGCTGAACGTATTTTTGGTGGAATATTATTGGCGATGTGTTCCAGTGATTTCATTTGCTTTTATGACTGGG

upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 12
atcctctcattgttataggcttatagctgtcttcgtattgaaataaatttgctctagggaatacttggtttagttggaatttaaacaattggtatttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
           |||   |   ||    | | |    |     | |   |     |  || || ||   | |  |  || || ||  |  || | |||||||| ||||  | | |||| ||  |||||||||| ||  | || ||||||||     |  |||| ||||| || |  |||||||||||||||||||||||||
gcaaatgtgaagtttctgatctagccatatttcacaaaaagcacattctaatcttttggtattctcattgtcctgtgacttaaattatctgatttttcagGAGAAGAAAACTATCCGCCCTTCATTTTCAGCAGAGCGTATTTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGG

upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 12
---atcctctcattgttataggcttatagctgtcttcgtattg-aaataaatttgctctagggaatacttggtttagttggaatttaaacaattggtat--ttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
     |||  || |||| |  | ||| |  |||      | || ||||| |||     | ||  | | |           || |||||  || ||| ||  ||||||||||||||||||||||||||||||||||||||||    || ||||| || ||| || |||| |||||||| || ||||| || || || ||||||||||
tattgcctgccactgttgtctggttacaagtgttaggtaaatgcaaatatattcctgttcggagaaattcaac------agagtttaatgaagtggcatctttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAGCATATTTTTGGAGGAACTTTATTGGCAATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgctctagggaatacttggtttagttggaatttaaacaattggtatttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
                                aatttaaacaatt  TA-rich tract