Sequence
atgc intronic sequence ATGC exonic sequence...atcctctcattgttataggcttatagctgtcttcgtattgaaataaatttgctctagggaatacttggtttagttggaatttaaacaattggtatttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
Basic information
species | Glycine max |
transcript | GLYMA13G43680.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 3'ss of exon 12
----atcctctcattgttataggcttatagctgtcttcgtattgaaataaatttgctctagggaatacttggtttagttggaatttaaacaattggtatttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
||| | ||| | | | | | | || | | || || | |||| | | | | | ||| || || | ||||| |||| | | | || || ||||||||||||||| | || |||||||| | || |||||||||| |||| |||||||| ||||||||||||||||
taaggaccttttattaatg-aatttggcaaagaattgcacatcatattctgttggcatttatcaatattgtatcttctgg---tttgaatgatccaatatgcagGAGAAGAAAACTATTCGCCCTACATTTTCAGCTGAACGTATTTTTGGTGGAATATTATTGGCGATGTGTTCCAGTGATTTCATTTGCTTTTATGACTGGG
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 12
atcctctcattgttataggcttatagctgtcttcgtattgaaataaatttgctctagggaatacttggtttagttggaatttaaacaattggtatttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
||| | || | | | | | | | | || || || | | | || || || | || | |||||||| |||| | | |||| || |||||||||| || | || |||||||| | |||| ||||| || | |||||||||||||||||||||||||
gcaaatgtgaagtttctgatctagccatatttcacaaaaagcacattctaatcttttggtattctcattgtcctgtgacttaaattatctgatttttcagGAGAAGAAAACTATCCGCCCTTCATTTTCAGCAGAGCGTATTTTTGGTGGGGTATTGTTGGCAATGTGTTCTAGTGATTTCATCTGCTTTTATGACTGGG
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 12
---atcctctcattgttataggcttatagctgtcttcgtattg-aaataaatttgctctagggaatacttggtttagttggaatttaaacaattggtat--ttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
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tattgcctgccactgttgtctggttacaagtgttaggtaaatgcaaatatattcctgttcggagaaattcaac------agagtttaatgaagtggcatctttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAGCATATTTTTGGAGGAACTTTATTGGCAATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttgctctagggaatacttggtttagttggaatttaaacaattggtatttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
aatttaaacaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcctctcattgttataggcttatagctgtcttcgtattgaaataaatttgctctagggaatacttggtttagttggaatttaaacaattggtatttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGG
-tcctctc
- - - - - - - - - - - - -gctgtct
- - - - - - - - - - - - - - - - - - - - aaataaa