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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaatcaatcagaggcctttctattttttctctcattcttcaatcccaactttttttttcttttcacttaaattctcctgttgctacttcaattcaagaagcatcacttaaatcatgaacttaaattgtaatatgagaatttgtgatgtgacccatttcagGAAGCCACTGGAGCAGTTCTTAAATGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTCTCACTATGGCA

Basic information

species Glycine max
transcript GLYMA13G43000.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43000.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv09s0002g03200.t01 (Vitis vinifera), 3'ss of exon 11
gtatttaatcaatcagaggcctttctattttttctctcattcttca-atcccaactttttttttcttttcacttaaattctcctgttgctacttcaattcaagaagcatcact---taaatcatgaacttaaattgtaatatgagaatttgtgatgtgacccatttcagGAAGCCACTGGAGCAGTTCTTAAATGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTCTCACTATGGCA
||| ||  |  |  ||| ||| |   |           |||  |   |   |||          |    ||   | |  | |  | | |||   |||   ||| | | |||     | |||||    | | |  | ||       | | ||| |||| |    | ||||||||||  ||||||| ||||| || |||||||||| |||||||||||| |||||||| |  ||| | |||| ||| ||||| |||||||| || ||||||
gtaattctttca--agatgccatctgaaaccaaagtaaattaatggtagtgcaaagcagaaacac----cagaaagaaacactcgattctaaaccaaa--aagcaccttcatgggatgaatcaaagcccttatgtttacagcagaagtgtgtcatgttattt-tctcagGAAGCCTTTGGAGCATTTCTTGAAGGCAGTAGATGAAATCACTTTGAAGGATATCACCACCATTGCCCAGAGGATCATTTCTTCACCTCTTACAATGGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaatcatgaacttaaattgtaatatgagaatttgtgatgtgacccatttcagGAAGCCACTGGAGCAGTTCTTAAATGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTCTCACTATGGCA
                                             cccatttc  CT-rich tract
              ttaaattgtaatatga  TA-rich tract