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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttgcaactctggctaaatctatttgccattgtgccaattgtttgattccattgatacgtgctacaagacttagttaggctttggtcctatccaagttcacccttatcttgattggacctgtaaatattgattcttgcactatattactagttcacctttaagaggatgctgtttttgtacatgcagCTTATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCAAGGTTATTATCTTCAACCCATCAGCCTAGCTTCTTGAATCCAAAAGATA

Basic information

species Glycine max
transcript GLYMA13G42990.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342082|gb|CO983347.1|CO983347
EST:     GCTTCACCGTAGGCCCAGTTAATGGCAGAAACTGTTACATTCCATTTCAT                         CTTATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCA
genomic: GCTTCACCGTAGGCCCAGTTAATGGCAGAAACTGTTACATTCCATTTCATgtaagttctt ... gtacatgcagCTTATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgcactatattactagttcacctttaagaggatgctgtttttgtacatgcagCTTATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCAAGGTTATTATCTTCAACCCATCAGCCTAGCTTCTTGAATCCAAAAGATA
                                        tttttgt  CT-rich tract
        tatattacta  TA-rich tract