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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgtaaaatagttagcaaaattgagttcgggttgggcttggtaagctcttttctgctttggttgtgaacaaatttcattattttgcacatggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG

Basic information

species Glycine max
transcript GLYMA13G42230.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21887595|gb|BQ740808.1|BQ740808
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
EST: gi|24136028|gb|BU926538.1|BU926538
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
EST: gi|22930642|gb|BU547789.1|BU547789
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
EST: gi|9205412|gb|BE331636.1|BE331636
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
EST: gi|14205753|gb|BG839431.1|BG839431
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcttttctgctttggttgtgaacaaatttcattattttgcacatggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG
                      aacaaatttcattatt  TA-rich tract