1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttctcattacaagtaaccttatgattgtcactgccgttacaaggtgccttgtggttgaaaactattgaacatttttgctatgctcttttattattttcagCTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTTTATATTACACCTGATATTGGTTTTGATTGGACGATAGGCAAAGGAAAAC
species | Glycine max |
transcript | GLYMA13G41520.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AACGCATGGAACCTATTGCTTCAAAGCATAACTTCAACTCATTTGCTGAG CTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTTEST: gi|7926265|gb|AW832291.1|AW832291
genomic: AACGCATGGAACCTATTGCTTCAAAGCATAACTTCAACTCATTTGCTGAGgtactcttgt ... ttattttcagCTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTT
EST: AACGCATGGAACCTATTGCTTCAAAGCATAACTTCAACTCATTTGCTGAG CTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTTEST: gi|8284147|gb|BE021706.1|BE021706
genomic: AACGCATGGAACCTATTGCTTCAAAGCATAACTTCAACTCATTTGCTGAGgtactcttgt ... ttattttcagCTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTT
EST: AACGCATGGAACCTATTGCTTCAAAGCATAACTTCAACTCATTTGCTGAG CTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTTEST: gi|8401863|gb|BE057497.1|BE057497
genomic: AACGCATGGAACCTATTGCTTCAAAGCATAACTTCAACTCATTTGCTGAGgtactcttgt ... ttattttcagCTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTT
EST: AACGCATGGAACCTATTGCTTCAAAGCATAACTTCAACTCATTTGCTGAG CTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTTEST: gi|10709625|gb|BF009349.1|BF009349
genomic: AACGCATGGAACCTATTGCTTCAAAGCATAACTTCAACTCATTTGCTGAGgtactcttgt ... ttattttcagCTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTT
EST: GCTTCAAAGCATAACTTCAACTCATTTGCTGAG CTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTT
genomic: GCTTCAAAGCATAACTTCAACTCATTTGCTGAGgtactcttgt ... ttattttcagCTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTT
gccttgtggttgaaaactattgaacatttttgctatgctcttttattattttcagCTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTTTATATTACACCTGATATTGGTTTTGATTGGACGATAGGCAAAGGAAAAC
ctcttttattattttc CT-rich tract
tcttttattattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcattacaagtaaccttatgattgtcactgccgttacaaggtgccttgtggttgaaaactattgaacatttttgctatgctcttttattattttcagCTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTTTATATTACACCTGATATTGGTTTTGATTGGACGATAGGCAAAGGAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - ccttatg
- - - - - - - - - - - - - - cactgcc
- - - - - - - - - - - - - - - - - - - - - ggtgcct
- - - - - - - - - - - - - - - - - - - - - - - - - gtggttg