Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcgattttgtggattatgttgctgtaactttttttatgcatttttgttattgtcagcaatataacctgtctccgttgttacagACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGGTAACAAA

Basic information

species Glycine max
transcript GLYMA13G40080.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40080.2 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os01g74460.1 (Oryza sativa), 3'ss of exon 11
----------gtagcgattttgtggattatgttgctgtaactttttttatgcatttttgttattgtcagcaatat-aacctgtctccgttgt-tacagACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGGTAACAAA
           |      ||| |  | ||   | |  |   | |||||    |  | || |||| ||   || || ||  |    | | | |   |||| |||| | |||||| || ||| | | ||| |||||||||||||||| || ||| ||||| |||||||| || ||||| |||||| | || |        
gtattgtattttgatttatttattaaatacaattcactgtttgttttt-catacgtatgatattttctataaaattaatattcaactgatatgcgcagATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATG--------

upper sequence: GLYMA13G40080.2 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G179732_T03 (Zea mays), 3'ss of exon 3
gtagcgattttgtggattatgttgctgtaactttttttatgcatttttg-ttattgtcagcaatataacctgtctccgttgttacagACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGGTAACAAA
|||   || |||      | | | ||  |  ||   || | || |  || || || |  | |  | |||||     | |   | |||| |||| | ||||||||| ||| | | |||||||||||||||||||| || ||| ||||||||||| || || ||||| |||||  | || |        
gtatgaatattg------acgctactacacattcacttttacaatagtgattcttctttgtatgacaacct-----catatgtgcagATTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGATTATG--------

upper sequence: GLYMA13G40080.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 3'ss of exon 11
----------------------------------gtagcgattttgtggattatgttgctgtaactttttttatgcatttttgttattgtcagcaatataacctgtctccgttgttacagACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCAC---ACAAAACCCAGTTTAGAAGGGATGAAAACTACGGTAACAAA
                                  |    || ||  ||| || | ||    |  || | | | | |   ||||||  |||||| || |||||  || |||  | || |||| | ||||||||||||||||| |||| ||| ||||||||||||| |||| | || || |   | ||||| ||||||||||||||||||||||| |        
gtaaaagtgttaaatctttgtgtcaacttcactggacatgagttc-tgggttcttttctgttgtctatgtcttttctgctttgttgctgtcaggaaaataacaagt-tcctcttttgcagATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGTGGGCCCCCCCCATAAAACACAGTTTAGAAGGGATGAAAACTATG--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482130|gb|AW201401.1|AW201401
EST:     GATTAACACTCCTAAGCAGCAGAAAAG                         ACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAAT
genomic: GATTAACACTCCTAAGCAGCAGAAAAGgtagcgattt ... gttgttacagACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttatgcatttttgttattgtcagcaatataacctgtctccgttgttacagACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGGTAACAAA
                              atataac  putative branch site (score: 3)
                                        tctccgtt  putative PPT
           atttttgttattgt  TA-rich tract