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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcttcatacattgatgtcaataattttgatataatattgttttagtttttaactatagtcctttcttgtgtgctatgttgtagTACTATATTGAGTTGCTGTGAGGATGGGACAATATGGCGTTGGGATGTTTCAAAACCCTCAACCTCAACCTCAACCGCAGCCTAA

Basic information

species Glycine max
transcript GLYMA13G36310.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36310.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 12
--------------gtaattcttcatacattgatgtca-ataattttgatataatattgttttagtttttaactatagtcctttcttgtgtgctatgttgtagTACTATATTGAGTTGCTGTGAGGATGGGACAATATGGCGTTGGGATGTT-TCAAAACCCTCAACCTCAACCTCAACCGCAGCCTAA--------------
              |    ||||  ||   ||||||   |||    || ||   |  |   |  ||  |        | | ||   |||   |||||||  || || ||  | || |||||||||||||||||||| ||||| ||||||| | |   ||| | |      |  |  ||  |   | | |              
gcatcccaacttaagatgctcttagtatcctgatgttgtatacaaatgctaacctcataaatctgtcatctctcgctgcctttgtctgt---ctatgttccagCACCATTCTAAGCTGCTGTGAGGATGGGACAATCTGGCGATGGGATGCTGTTGCAACACCCTGAGCTATTCGTAAGGGTCTCGTCACAGGGCTTCACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataatattgttttagtttttaactatagtcctttcttgtgtgctatgttgtagTACTATATTGAGTTGCTGTGAGGATGGGACAATATGGCGTTGGGATGTTTCAAAACCCTCAACCTCAACCTCAACCGCAGCCTAA
                  ttttaac  putative branch site (score: 2)
     atattgttttagtttt  TA-rich tract