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gtgaagtagagtatattcttcgttattcacagatcataaattttgatgttgaggtctaagaaaattttccttcttcaaaattaacagGTGTCTATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTAGCTACAAATAAGTCATCAGCAGATGGAACACCAACACGTGTGGAAAATGGTACTC
species | Glycine max |
transcript | GLYMA13G36230.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTCAAACAAAACAGTCTCAGCAACCCCAAGGCTGGAAATATGAAATGCAG GTGTCTATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTAGCTACAEST: gi|207788233|gb|GD762045.1|GD762045
genomic: TTCAAACAAAACAGTCTCAGCAACCCCAAGGCTGGAAATATGAAATGCAGgtgaagtaga ... aaattaacagGTGTCTATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTAGCTACA
EST: TTCAAACAAAACAGTCTCAGCAACCCCAAGGCTGG-AATATGAAATGCAG GTGTCTATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTAGCTACA
genomic: TTCAAACAAAACAGTCTCAGCAACCCCAAGGCTGGAAATATGAAATGCAGgtgaagtaga ... aaattaacagGTGTCTATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTAGCTACA
atcataaattttgatgttgaggtctaagaaaattttccttcttcaaaattaacagGTGTCTATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTAGCTACAAATAAGTCATCAGCAGATGGAACACCAACACGTGTGGAAAATGGTACTC
ttttgat putative branch site (score: 4)
ttttccttcttcaa putative PPT
tctaagaaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagtagagtatattcttcgttattcacagatcataaattttgatgttgaggtctaagaaaattttccttcttcaaaattaacagGTGTCTATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTAGCTACAAATAAGTCATCAGCAGATGGAACACCAACACGTGTGGAAAATGGTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA