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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatgactgtcttgaactacttactattaccacatgctgttaattgccatttgtcacacgatccatgcgacaattttaagcaaaaccttgtccaatgaaaattccctgcttctaaacgattgataatttacttctttttttttttcttttctttctttccatttacctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTGTCTGGGTTATTCAG

Basic information

species Glycine max
transcript GLYMA13G31830.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31830.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 3'ss of exon 11
gtaagtatgactgtcttgaactacttactattaccacatgctgt-taattgccatttgtcacacgatccatgcgacaattttaagcaaaaccttgtccaatgaaaattccctgcttctaaacgattgataatttacttctttttttttttcttttctttctttccatttacctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTGTCTGGGTTATTCAG
       | | |||      |  |  | ||||   | |||||   ||| |    || |  |  |  |   ||   ||   | |||  || |    | |  |  | || ||   |    ||||  ||  | || |  |   |    |  ||  | |  || ||          || |||| |||||||||||||||||||||||||||||| | ||| ||||| ||||  |||||||||| |||
------gtaagtgt-----gcatcgcattattgttagatgctaagtaactatggttagatatgcagtttttgattca---tgaagataatcaacttacctttcagatgcctaccgaaaaaactctttctgatcttgtcggtcaagtaattggtgtaatttttctt-------tgcagATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAG

upper sequence: GLYMA13G31830.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G041181_T01 (Zea mays), 3'ss of exon 11
---------------gtaagtatgactgtcttgaactacttac-tattaccacatgc-tgttaattgccatttgt-cacacg-atccatgcgacaattttaagcaaaaccttgtccaatgaaaattccctgcttctaa-acgattgataatttacttcttttttt--ttttcttttctttctttccatttacctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTGTCTGGGTTATTCAG
                |  || ||        ||  ||  ||  |||    | ||   | |  ||    || | |  | |   ||  ||      || |     ||||  |||   ||| |  ||    |     | |  |||   ||||||   |  || ||||  |   ||  |  | |   |  ||   ||| |||| ||||||||||||||||||||| |||||||  | ||| ||||| | ||  ||||||| || |||
gtaagctgatcacctttttgtttgctaaatcagatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctttgaaaattttgataaataatcatctagtatccttgatgcgaaacataattctatggttcttttggtaacctagtaatccacacgcttgttctgcagATATTCTACTTTGTTGGATTTGGACTGTTCTGTCTGGAATCATTGCTTAGCATCTGGGTCATCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgataatttacttctttttttttttcttttctttctttccatttacctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTGTCTGGGTTATTCAG
 gattgat  putative branch site (score: 4)
         tttacttctttttttt  putative PPT
     ataatttacttctttt  TA-rich tract