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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtctgctgagacataagagttactgaattacattgttcattttactgcaatttaaactgctgatgaaaaataaatttctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGTATGTTGCTAACAATCACACTGGTGCAATATCATTTCTAATAGCCGATTT

Basic information

species Glycine max
transcript GLYMA13G23230.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663023|gb|BI700394.1|BI700394
EST:     TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAA                         GAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
genomic: TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAgtatgtgtct ... ctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
EST: gi|15814634|gb|BI786909.1|BI786909
EST:     TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAA                         GAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
genomic: TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAgtatgtgtct ... ctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
EST: gi|298180896|gb|HO022335.1|HO022335
EST:     TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAA                         GAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
genomic: TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAgtatgtgtct ... ctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
EST: gi|58018760|gb|CX705502.1|CX705502
EST:     AAGTTTCAGCAATG-TGGGTACTGGGTGGAGTTTGTCTTACAA                         GAGTGTTAACTGATCCACTTGCACNTCAGTCATTTGGGGCATGGATTCAGT
genomic: AAGTTTCAGCAATGTTGGTTACT-GGTGGAGTTTGTCTTACAAgtatgtgtct ... ctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcattttactgcaatttaaactgctgatgaaaaataaatttctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGTATGTTGCTAACAATCACACTGGTGCAATATCATTTCTAATAGCCGATTT
                         tgctgat  putative branch site (score: 3)
                                          tttctgc  putative PPT
                            tgatgaaaaataaatt  TA-rich tract