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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaacaaaataatccattggtttgatccataaatctcatcataggaacaagtgattctttcagacaaccttttcttaagggagaatcaaagagtttgattacactgatggaaatcagACAGTTGCTCTAGTAGGTGAAAGCGGAAGTGGAAAGTCAACAGTGATCTCATTGCTACAAAGATTTTATGGCCCAGATTCGGGTCAGATTACACTTGATG

Basic information

species Glycine max
transcript GLYMA13G17890.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17890.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv05s0020g00890.t01 (Vitis vinifera), 3'ss of exon 10
gtaactaacaaaataatccattggtttgatccataaatctcatcataggaacaagtgattctttcagacaaccttttcttaagggagaatcaaagagtttgattacactgatggaaatcagACAGTTGCTCTAGTAGGTGAAAGCGGAAGTGGAAAGTCAACAGTGATCTCATTGCTACAAAGATTTTATGGCCCAGATTCGGGTCAGATTACACTTGATG
||||||  |  | | |  ||        |||| |   |    |   ||   | | |  || ||    | ||   |   ||        || ||  |  |  ||   |||        ||||||||||||||| || || ||||| || ||||| || |||||||  |||||| || | || |||||||||| ||| ||||| ||||| || || || ||||
gtaactttctca-tgacaca---aacacatcctttctttcagtttcagcttctattctttgttctgcataattgtaagttgtacatacat-aacaatctgaatcttactt------ctcagACAGTTGCTCTGGTCGGAGAAAGTGGGAGTGGTAAATCAACAGCAATCTCACTGTTGCAGAGATTTTATGACCCGGATTCAGGTCATATCACTCTGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaaccttttcttaagggagaatcaaagagtttgattacactgatggaaatcagACAGTTGCTCTAGTAGGTGAAAGCGGAAGTGGAAAGTCAACAGTGATCTCATTGCTACAAAGATTTTATGGCCCAGATTCGGGTCAGATTACACTTGATG
                                       cactgat  putative branch site (score: 3)
       ttttcttaa  TA-rich tract