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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgaattttctgtcgagtaagctttcttttgctttggggtaaaatgcttgcttttgtttgcaccattcaaaataatatggcttttgttttcagAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCTATATTGATGAGTTCATGCATCGGCTGAATTCGGCATTGTTATATTTATA

Basic information

species Glycine max
transcript GLYMA13G16040.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13788778|gb|BG651369.1|BG651369
EST:     GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAG                         AATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
genomic: GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGgttagtgaat ... ttgttttcagAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
EST: gi|214006038|gb|DB990447.1|DB990447
EST:     AGCATACTGACAATGCTCCTAAAAGATCATATGCTGGCCACCAG                         ATTTTTTACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
genomic: AGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGgttagtgaat ... ttgttttcagAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
EST: gi|58015534|gb|CX702276.1|CX702276
EST:     GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAG                         AATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
genomic: GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGgttagtgaat ... ttgttttcagAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
EST: gi|58015738|gb|CX702480.1|CX702480
EST:     GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAG                         AATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
genomic: GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGgttagtgaat ... ttgttttcagAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
EST: gi|209699336|gb|BW664055.1|BW664055
EST:     GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAG                         AATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
genomic: GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGgttagtgaat ... ttgttttcagAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
EST: gi|57573985|gb|CX546960.1|CX546960
EST:     GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAG                         AATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT
genomic: GCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGgttagtgaat ... ttgttttcagAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaaatgcttgcttttgtttgcaccattcaaaataatatggcttttgttttcagAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAGGAAACTGCTATATTGATGAGTTCATGCATCGGCTGAATTCGGCATTGTTATATTTATA
                                          cttttgttttc  CT-rich tract
                          attcaaaataatat  TA-rich tract