1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aaatgtggcattgtgatttgtttacttcttcctaagtctgcatatcataagtttatgttcttgtacttacaatttggctgtttgctgtaattgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGATAAAATGCCCACTGGAAGGATTCACAAGGGAGTGTGTTCAACATGGATGAAG
species | Glycine max |
transcript | GLYMA13G00990.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCAATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGATAAAATEST: gi|105637293|gb|DY577108.1|DY577108
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCAATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGATAAAAT
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCAATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTEST: gi|7691075|gb|AW759209.1|AW759209
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCAATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGT
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCAATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGATAAAAT
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCAATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGATAAAAT
cataagtttatgttcttgtacttacaatttggctgtttgctgtaattgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGATAAAATGCCCACTGGAAGGATTCACAAGGGAGTGTGTTCAACATGGATGAAG
tacttac putative branch site (score: 1)
taattgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgtggcattgtgatttgtttacttcttcctaagtctgcatatcataagtttatgttcttgtacttacaatttggctgtttgctgtaattgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGATAAAATGCCCACTGGAAGGATTCACAAGGGAGTGTGTTCAACATGGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- atgtggc
- - - - - - -tgatttg
- - - - - - - - - - - - -ttcttcc
- - - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgta